miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3912 3' -56 NC_001650.1 + 141993 0.66 0.902184
Target:  5'- ----uCCCGGgggaaccuCAUGCUGGGGUCGAGAg -3'
miRNA:   3'- cuuguGGGUC--------GUGCGGUCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 101703 0.66 0.900283
Target:  5'- cGggUGCCCgaAGCGCGCgcgguacaggcacuCGGGGUCGucgcAGAa -3'
miRNA:   3'- -CuuGUGGG--UCGUGCG--------------GUCCCAGU----UCU- -5'
3912 3' -56 NC_001650.1 + 109282 0.67 0.895767
Target:  5'- gGGGCGCCCcGCucguCGCCcuGGcCAAGAu -3'
miRNA:   3'- -CUUGUGGGuCGu---GCGGucCCaGUUCU- -5'
3912 3' -56 NC_001650.1 + 47683 0.67 0.895767
Target:  5'- uGGCACaCCGGCGCGCCcuuuugcuGGGaUgGAGGa -3'
miRNA:   3'- cUUGUG-GGUCGUGCGGu-------CCC-AgUUCU- -5'
3912 3' -56 NC_001650.1 + 44411 0.67 0.882251
Target:  5'- aGGACACa----ACGCCAGGGaCAAGAg -3'
miRNA:   3'- -CUUGUGggucgUGCGGUCCCaGUUCU- -5'
3912 3' -56 NC_001650.1 + 41315 0.67 0.881552
Target:  5'- --uCGCCCgAGCGCGCCGgcugcacGGGcCGGGGc -3'
miRNA:   3'- cuuGUGGG-UCGUGCGGU-------CCCaGUUCU- -5'
3912 3' -56 NC_001650.1 + 30184 0.67 0.875161
Target:  5'- aGAACACCC-GCGagGCCcugGGGGUCcuGAc -3'
miRNA:   3'- -CUUGUGGGuCGUg-CGG---UCCCAGuuCU- -5'
3912 3' -56 NC_001650.1 + 126804 0.67 0.867855
Target:  5'- gGAGUGCCguGCGCGCCcGGGccgCAGGGg -3'
miRNA:   3'- -CUUGUGGguCGUGCGGuCCCa--GUUCU- -5'
3912 3' -56 NC_001650.1 + 160041 0.67 0.867855
Target:  5'- cGGCACcuCCAGCGCGaCCccgGGGGUCucGGAc -3'
miRNA:   3'- cUUGUG--GGUCGUGC-GG---UCCCAGu-UCU- -5'
3912 3' -56 NC_001650.1 + 112844 0.67 0.867855
Target:  5'- gGAGCGCgCCGGCGCa--GGGGUUggGGu -3'
miRNA:   3'- -CUUGUG-GGUCGUGcggUCCCAGuuCU- -5'
3912 3' -56 NC_001650.1 + 29031 0.68 0.860339
Target:  5'- gGAGUACCC-GCACGCCcucGGGGcgCGGGGg -3'
miRNA:   3'- -CUUGUGGGuCGUGCGG---UCCCa-GUUCU- -5'
3912 3' -56 NC_001650.1 + 111081 0.68 0.860339
Target:  5'- gGGGC-UCCAGCgGCGCCAGGcG-CGAGGg -3'
miRNA:   3'- -CUUGuGGGUCG-UGCGGUCC-CaGUUCU- -5'
3912 3' -56 NC_001650.1 + 94875 0.68 0.854955
Target:  5'- -cGCGCCCaacauggAGCACGCggcccgggccaggucCAGGGUCAgcAGGg -3'
miRNA:   3'- cuUGUGGG-------UCGUGCG---------------GUCCCAGU--UCU- -5'
3912 3' -56 NC_001650.1 + 6901 0.68 0.852618
Target:  5'- ---uGCCCAGCAa-CCAGGGUCu--- -3'
miRNA:   3'- cuugUGGGUCGUgcGGUCCCAGuucu -5'
3912 3' -56 NC_001650.1 + 173608 0.68 0.852618
Target:  5'- ---uGCCCAGCAa-CCAGGGUCu--- -3'
miRNA:   3'- cuugUGGGUCGUgcGGUCCCAGuucu -5'
3912 3' -56 NC_001650.1 + 130308 0.68 0.852618
Target:  5'- cAACGCCaGGCugGCCGcGGUCAucgaGGAg -3'
miRNA:   3'- cUUGUGGgUCGugCGGUcCCAGU----UCU- -5'
3912 3' -56 NC_001650.1 + 22628 0.68 0.852618
Target:  5'- cAGCGCCCccAGCGCGCgGGGGgcgCGu-- -3'
miRNA:   3'- cUUGUGGG--UCGUGCGgUCCCa--GUucu -5'
3912 3' -56 NC_001650.1 + 156168 0.68 0.852618
Target:  5'- uGGAUGCCCcGCugGauguCCAGGGUCAc-- -3'
miRNA:   3'- -CUUGUGGGuCGugC----GGUCCCAGUucu -5'
3912 3' -56 NC_001650.1 + 146441 0.68 0.852618
Target:  5'- -uACACCaccaGGUggGgCAGGGUCAGGGu -3'
miRNA:   3'- cuUGUGGg---UCGugCgGUCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 49892 0.68 0.844699
Target:  5'- gGAGgGCCCcggGGgGCGCCGGGGgggAAGAc -3'
miRNA:   3'- -CUUgUGGG---UCgUGCGGUCCCag-UUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.