miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3912 5' -64.6 NC_001650.1 + 176695 0.67 0.522322
Target:  5'- gGGCCUUGGGCAauaaagcccguGGCccaauGGggGCUACCCAc -3'
miRNA:   3'- -CUGGGACCCGU-----------CCG-----CCagCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 9988 0.67 0.522322
Target:  5'- gGGCCUUGGGCAauaaagcccguGGCccaauGGggGCUACCCAc -3'
miRNA:   3'- -CUGGGACCCGU-----------CCG-----CCagCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 47539 0.67 0.513127
Target:  5'- -uCCCUGGGUcuauGUGG-CGCCGCCUg -3'
miRNA:   3'- cuGGGACCCGuc--CGCCaGCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 52574 0.67 0.504
Target:  5'- gGGCgCgcaGGCAGGCGGcCGCCAgCUCGg -3'
miRNA:   3'- -CUGgGac-CCGUCCGCCaGCGGU-GGGU- -5'
3912 5' -64.6 NC_001650.1 + 69418 0.67 0.494944
Target:  5'- cGCCCUGGGCGuGuGCaGGaUCcCCGCCCu -3'
miRNA:   3'- cUGGGACCCGU-C-CG-CC-AGcGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 111098 0.67 0.494944
Target:  5'- aGGCgCgaGGGC-GGCGGUCGCgACgCGg -3'
miRNA:   3'- -CUG-GgaCCCGuCCGCCAGCGgUGgGU- -5'
3912 5' -64.6 NC_001650.1 + 125032 0.67 0.485963
Target:  5'- -uCCCggGGGCggaggacgccGGGCGGggCGCCucGCCCGg -3'
miRNA:   3'- cuGGGa-CCCG----------UCCGCCa-GCGG--UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 62815 0.67 0.485963
Target:  5'- gGugCUUGaGGCgcgAGGCGG-CGCC-CCCGg -3'
miRNA:   3'- -CugGGAC-CCG---UCCGCCaGCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 73418 0.67 0.485963
Target:  5'- uGGCUCUGaGGCugcuGGCGaUCGCCcgggGCCCGu -3'
miRNA:   3'- -CUGGGAC-CCGu---CCGCcAGCGG----UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 131389 0.67 0.47706
Target:  5'- -uCCCaGGGCGGGCaGGgCGCCgagaacgccgcGCCCGu -3'
miRNA:   3'- cuGGGaCCCGUCCG-CCaGCGG-----------UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 133463 0.67 0.47706
Target:  5'- -gUCCUGcGaGCAGGUGGUgGCggCGCCCAc -3'
miRNA:   3'- cuGGGAC-C-CGUCCGCCAgCG--GUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 39641 0.67 0.47706
Target:  5'- gGACCC-GGGcCAGGCGGUaGCuCugCUg -3'
miRNA:   3'- -CUGGGaCCC-GUCCGCCAgCG-GugGGu -5'
3912 5' -64.6 NC_001650.1 + 41431 0.67 0.468238
Target:  5'- uGACCCccgucUGGGCc--CGGcCGCCGCCCu -3'
miRNA:   3'- -CUGGG-----ACCCGuccGCCaGCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 167945 0.67 0.46736
Target:  5'- gGACCCuaaccccaaUGGGCGGGCcacaugaGGUCagugggcagGCCACCUc -3'
miRNA:   3'- -CUGGG---------ACCCGUCCG-------CCAG---------CGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 1238 0.67 0.46736
Target:  5'- gGACCCuaaccccaaUGGGCGGGCcacaugaGGUCagugggcagGCCACCUc -3'
miRNA:   3'- -CUGGG---------ACCCGUCCG-------CCAG---------CGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 28025 0.68 0.4595
Target:  5'- uGGCCCUggccGGGCAGuGCGGg-GUgACCCu -3'
miRNA:   3'- -CUGGGA----CCCGUC-CGCCagCGgUGGGu -5'
3912 5' -64.6 NC_001650.1 + 49456 0.68 0.4595
Target:  5'- uGCCuCUGGGgcauCAGGgGG-CGCCGCCUc -3'
miRNA:   3'- cUGG-GACCC----GUCCgCCaGCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 16903 0.68 0.45085
Target:  5'- gGGCCCgGGGgaGGGCGGcagcccggccUCGCC-CCCu -3'
miRNA:   3'- -CUGGGaCCCg-UCCGCC----------AGCGGuGGGu -5'
3912 5' -64.6 NC_001650.1 + 51164 0.68 0.45085
Target:  5'- uGCCCgcgGGGCAGGCGG-CGCgCGuggUCUAc -3'
miRNA:   3'- cUGGGa--CCCGUCCGCCaGCG-GU---GGGU- -5'
3912 5' -64.6 NC_001650.1 + 72847 0.68 0.442291
Target:  5'- cGACCC----CAGGUGGcCGCCACCCu -3'
miRNA:   3'- -CUGGGacccGUCCGCCaGCGGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.