miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3916 3' -51.6 NC_001650.1 + 27961 0.66 0.993553
Target:  5'- -cGCGGgCUGGUGAccGCGGGccacgACGUgAg -3'
miRNA:   3'- caUGCCgGACCACU--UGCUCa----UGUAgU- -5'
3916 3' -51.6 NC_001650.1 + 68100 0.66 0.992574
Target:  5'- --uUGaGCCUGGcGcGCGGGUugGUCAg -3'
miRNA:   3'- cauGC-CGGACCaCuUGCUCAugUAGU- -5'
3916 3' -51.6 NC_001650.1 + 78675 0.66 0.991481
Target:  5'- -cACGGCCUGGcgGAggacGCGGGcGCAg-- -3'
miRNA:   3'- caUGCCGGACCa-CU----UGCUCaUGUagu -5'
3916 3' -51.6 NC_001650.1 + 108228 0.66 0.991481
Target:  5'- -cGCGGCC--GUGGACGAGgcgGUCAa -3'
miRNA:   3'- caUGCCGGacCACUUGCUCaugUAGU- -5'
3916 3' -51.6 NC_001650.1 + 48156 0.66 0.991481
Target:  5'- -gGCGGCCgcggGGcUGGGgGAGUAC-UCu -3'
miRNA:   3'- caUGCCGGa---CC-ACUUgCUCAUGuAGu -5'
3916 3' -51.6 NC_001650.1 + 320 0.67 0.985788
Target:  5'- -aGCGGCCaucuUGGUGGGCGAccACcUCGg -3'
miRNA:   3'- caUGCCGG----ACCACUUGCUcaUGuAGU- -5'
3916 3' -51.6 NC_001650.1 + 167027 0.67 0.985788
Target:  5'- -aGCGGCCaucuUGGUGGGCGAccACcUCGg -3'
miRNA:   3'- caUGCCGG----ACCACUUGCUcaUGuAGU- -5'
3916 3' -51.6 NC_001650.1 + 49940 0.67 0.98399
Target:  5'- -gGgGGCCUGGcGGGCGGGgaauCGUCc -3'
miRNA:   3'- caUgCCGGACCaCUUGCUCau--GUAGu -5'
3916 3' -51.6 NC_001650.1 + 118045 0.68 0.977558
Target:  5'- -gGCGGgCaGGcUGGACGAGUACAg-- -3'
miRNA:   3'- caUGCCgGaCC-ACUUGCUCAUGUagu -5'
3916 3' -51.6 NC_001650.1 + 147413 0.68 0.977558
Target:  5'- ---gGGCCUGGaugaUGGugGGGUACAg-- -3'
miRNA:   3'- caugCCGGACC----ACUugCUCAUGUagu -5'
3916 3' -51.6 NC_001650.1 + 83583 0.72 0.871994
Target:  5'- aGUACGGgagGGUGGaggcggucuccaaacACGAGUGCGUCAa -3'
miRNA:   3'- -CAUGCCggaCCACU---------------UGCUCAUGUAGU- -5'
3916 3' -51.6 NC_001650.1 + 25973 0.72 0.861313
Target:  5'- -cACGGCCgccagcccccUGGUGAGgcAGUACAUCAu -3'
miRNA:   3'- caUGCCGG----------ACCACUUgcUCAUGUAGU- -5'
3916 3' -51.6 NC_001650.1 + 73841 0.99 0.037385
Target:  5'- uGUACGGCCUGG-GAACGAGUACAUCAc -3'
miRNA:   3'- -CAUGCCGGACCaCUUGCUCAUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.