miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3925 3' -56.4 NC_001650.1 + 182481 0.66 0.944465
Target:  5'- uGggGAGAGGGUGGGuugggucAGGGGGa-- -3'
miRNA:   3'- gCuaCUCUCCUACCUgc-----UCCCCCagg -5'
3925 3' -56.4 NC_001650.1 + 52613 0.66 0.944465
Target:  5'- gGAUGGGGGccacUGG-CccGGGGGUCCu -3'
miRNA:   3'- gCUACUCUCcu--ACCuGcuCCCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 15774 0.66 0.944465
Target:  5'- uGggGAGAGGGUGGGuugggucAGGGGGa-- -3'
miRNA:   3'- gCuaCUCUCCUACCUgc-----UCCCCCagg -5'
3925 3' -56.4 NC_001650.1 + 40385 0.66 0.944465
Target:  5'- ---cGAGGGGGgcgcgaGGGCGAGucaccagcGGGGUCa -3'
miRNA:   3'- gcuaCUCUCCUa-----CCUGCUC--------CCCCAGg -5'
3925 3' -56.4 NC_001650.1 + 171371 0.66 0.944465
Target:  5'- ---cGGGGGGucuuUGGGgGuccGGGGGGUCUu -3'
miRNA:   3'- gcuaCUCUCCu---ACCUgC---UCCCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 83578 0.66 0.944465
Target:  5'- gGggGAGuacGGGAgGGugGAGGcGGUCUc -3'
miRNA:   3'- gCuaCUC---UCCUaCCugCUCCcCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 4664 0.66 0.944465
Target:  5'- ---cGGGGGGucuuUGGGgGuccGGGGGGUCUu -3'
miRNA:   3'- gcuaCUCUCCu---ACCUgC---UCCCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 126476 0.66 0.94403
Target:  5'- gGggGAcGGGGGUccgucgaGGACGGGgaGGGGUCUu -3'
miRNA:   3'- gCuaCU-CUCCUA-------CCUGCUC--CCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 109577 0.66 0.935344
Target:  5'- --cUGGGAGG--GGAacgcccggGAGGGGGUCUc -3'
miRNA:   3'- gcuACUCUCCuaCCUg-------CUCCCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 61454 0.66 0.934865
Target:  5'- uGAUGAGGGGG-GGAUcgaaGAGGGccccgaagugccuGGUCa -3'
miRNA:   3'- gCUACUCUCCUaCCUG----CUCCC-------------CCAGg -5'
3925 3' -56.4 NC_001650.1 + 14616 0.66 0.930448
Target:  5'- --cUGGGccaauAGGGUGGGCuAGGGGGUg- -3'
miRNA:   3'- gcuACUC-----UCCUACCUGcUCCCCCAgg -5'
3925 3' -56.4 NC_001650.1 + 125005 0.66 0.930448
Target:  5'- ---cGAGAGGcucucGAUcgccaGAGGGGGUCCc -3'
miRNA:   3'- gcuaCUCUCCuac--CUG-----CUCCCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 21669 0.66 0.930448
Target:  5'- aGcgGGGAcGAcGGcGCGGGGGGGcCCu -3'
miRNA:   3'- gCuaCUCUcCUaCC-UGCUCCCCCaGG- -5'
3925 3' -56.4 NC_001650.1 + 182008 0.66 0.930448
Target:  5'- -uGUGAGAGaGGUGGA-GAGGGGcGgCUg -3'
miRNA:   3'- gcUACUCUC-CUACCUgCUCCCC-CaGG- -5'
3925 3' -56.4 NC_001650.1 + 151637 0.66 0.930448
Target:  5'- --uUGGGucuGGAUcugggucagaaGGAgGuGGGGGUCCa -3'
miRNA:   3'- gcuACUCu--CCUA-----------CCUgCuCCCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 15301 0.66 0.930448
Target:  5'- -uGUGAGAGaGGUGGA-GAGGGGcGgCUg -3'
miRNA:   3'- gcUACUCUC-CUACCUgCUCCCC-CaGG- -5'
3925 3' -56.4 NC_001650.1 + 6594 0.66 0.930448
Target:  5'- gGGUGGuGuuGGUGGugGAGGGuGGUg- -3'
miRNA:   3'- gCUACU-CucCUACCugCUCCC-CCAgg -5'
3925 3' -56.4 NC_001650.1 + 75839 0.66 0.930448
Target:  5'- uGAUGGGcucucGGGggGGACcccgucgauguuGuGGGGGUUCg -3'
miRNA:   3'- gCUACUC-----UCCuaCCUG------------CuCCCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 181323 0.66 0.930448
Target:  5'- --cUGGGccaauAGGGUGGGCuAGGGGGUg- -3'
miRNA:   3'- gcuACUC-----UCCUACCUGcUCCCCCAgg -5'
3925 3' -56.4 NC_001650.1 + 173301 0.66 0.930448
Target:  5'- gGGUGGuGuuGGUGGugGAGGGuGGUg- -3'
miRNA:   3'- gCUACU-CucCUACCugCUCCC-CCAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.