miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3925 3' -56.4 NC_001650.1 + 98448 0.66 0.925325
Target:  5'- gGAcgGGGAGGA-GGGugUGAGGGGGg-- -3'
miRNA:   3'- gCUa-CUCUCCUaCCU--GCUCCCCCagg -5'
3925 3' -56.4 NC_001650.1 + 28195 0.66 0.925325
Target:  5'- aCGGUgGAGcccAGGAcGGGCGAGGGgcacgugguGGUCa -3'
miRNA:   3'- -GCUA-CUC---UCCUaCCUGCUCCC---------CCAGg -5'
3925 3' -56.4 NC_001650.1 + 178633 0.67 0.919978
Target:  5'- uGGUGAGGGGua-GAgUGAGGGGGgaucuuaCCa -3'
miRNA:   3'- gCUACUCUCCuacCU-GCUCCCCCa------GG- -5'
3925 3' -56.4 NC_001650.1 + 173162 0.67 0.91943
Target:  5'- gCGGUGGGAaaGAgagGGGCGugugcccGGaGGGGUCCu -3'
miRNA:   3'- -GCUACUCUc-CUa--CCUGC-------UC-CCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 6455 0.67 0.91943
Target:  5'- gCGGUGGGAaaGAgagGGGCGugugcccGGaGGGGUCCu -3'
miRNA:   3'- -GCUACUCUc-CUa--CCUGC-------UC-CCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 47603 0.67 0.914405
Target:  5'- aGAUGAGAucaGGAUGaggcgucuguGGCGGGGGcGGUg- -3'
miRNA:   3'- gCUACUCU---CCUAC----------CUGCUCCC-CCAgg -5'
3925 3' -56.4 NC_001650.1 + 101919 0.67 0.908608
Target:  5'- gCGAacgGGGGcGGGUgGGGCGAgcgGGGGGcUCCc -3'
miRNA:   3'- -GCUa--CUCU-CCUA-CCUGCU---CCCCC-AGG- -5'
3925 3' -56.4 NC_001650.1 + 92378 0.67 0.90259
Target:  5'- aGcUGuuuGGGGgcGGGgGuGGGGGUCCc -3'
miRNA:   3'- gCuACu--CUCCuaCCUgCuCCCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 109119 0.67 0.90259
Target:  5'- --cUGGGGGaGGUGGACGAGGcGgcgcacccGGUCUa -3'
miRNA:   3'- gcuACUCUC-CUACCUGCUCC-C--------CCAGG- -5'
3925 3' -56.4 NC_001650.1 + 28067 0.67 0.900741
Target:  5'- gGcgGGGAGGAcgUGGGCGAcGccauccacaacauaGGGUCCu -3'
miRNA:   3'- gCuaCUCUCCU--ACCUGCUcC--------------CCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 13250 0.67 0.896351
Target:  5'- -aAUGGGAGGcugGGugGAGGGuaccucgcGGUCa -3'
miRNA:   3'- gcUACUCUCCua-CCugCUCCC--------CCAGg -5'
3925 3' -56.4 NC_001650.1 + 31240 0.67 0.896351
Target:  5'- cCGG-GAcGAGGGUgGGGCGaAGGGGGcggaggCCa -3'
miRNA:   3'- -GCUaCU-CUCCUA-CCUGC-UCCCCCa-----GG- -5'
3925 3' -56.4 NC_001650.1 + 70031 0.67 0.896351
Target:  5'- gGAgc-GGGcGGUGGACGAgcuuuucuuuuGGGGGUCUc -3'
miRNA:   3'- gCUacuCUC-CUACCUGCU-----------CCCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 179957 0.67 0.896351
Target:  5'- -aAUGGGAGGcugGGugGAGGGuaccucgcGGUCa -3'
miRNA:   3'- gcUACUCUCCua-CCugCUCCC--------CCAGg -5'
3925 3' -56.4 NC_001650.1 + 89667 0.67 0.889895
Target:  5'- gGAgauGAGGGUGGAC-AGGGaGG-CCg -3'
miRNA:   3'- gCUacuCUCCUACCUGcUCCC-CCaGG- -5'
3925 3' -56.4 NC_001650.1 + 24102 0.67 0.889895
Target:  5'- gCGggGAuGAGGucccUGGACGuGGaGGUCCc -3'
miRNA:   3'- -GCuaCU-CUCCu---ACCUGCuCCcCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 46895 0.67 0.889895
Target:  5'- uGAUGGcuuguggaaguGGGGcUGGG-GGGGGGGUUCg -3'
miRNA:   3'- gCUACU-----------CUCCuACCUgCUCCCCCAGG- -5'
3925 3' -56.4 NC_001650.1 + 77438 0.67 0.889895
Target:  5'- uGcgGGGAGGA-GGG-GAGGGGGg-- -3'
miRNA:   3'- gCuaCUCUCCUaCCUgCUCCCCCagg -5'
3925 3' -56.4 NC_001650.1 + 153273 0.68 0.883225
Target:  5'- -uGUGGGAGGA-GGACGucgcgcGGGcGGUgCCa -3'
miRNA:   3'- gcUACUCUCCUaCCUGCu-----CCC-CCA-GG- -5'
3925 3' -56.4 NC_001650.1 + 86060 0.68 0.876345
Target:  5'- aCGAggaagGGGAGGA-GGACGGGGacGGGg-- -3'
miRNA:   3'- -GCUa----CUCUCCUaCCUGCUCC--CCCagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.