miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3925 5' -67.1 NC_001650.1 + 148522 0.66 0.519702
Target:  5'- --cGCaCCCCGCggccgugaGCCCC-CCgGCCa -3'
miRNA:   3'- ccuCGgGGGGCGag------CGGGGuGGgCGG- -5'
3925 5' -67.1 NC_001650.1 + 4732 0.66 0.519702
Target:  5'- cGGAgGCCCUCCGU--GCCCgGCUCGg- -3'
miRNA:   3'- -CCU-CGGGGGGCGagCGGGgUGGGCgg -5'
3925 5' -67.1 NC_001650.1 + 171439 0.66 0.519702
Target:  5'- cGGAgGCCCUCCGU--GCCCgGCUCGg- -3'
miRNA:   3'- -CCU-CGGGGGGCGagCGGGgUGGGCgg -5'
3925 5' -67.1 NC_001650.1 + 142678 0.66 0.519702
Target:  5'- ---cCUCUCCGC-CGCCgCGCCgGCCg -3'
miRNA:   3'- ccucGGGGGGCGaGCGGgGUGGgCGG- -5'
3925 5' -67.1 NC_001650.1 + 125648 0.66 0.519702
Target:  5'- ---aUCCaCCCGgaCGCCCUGCCCgggGCCa -3'
miRNA:   3'- ccucGGG-GGGCgaGCGGGGUGGG---CGG- -5'
3925 5' -67.1 NC_001650.1 + 152951 0.66 0.519702
Target:  5'- aGGGGCUCCgCGUcggcaaUgGCCuCCGCCC-CCu -3'
miRNA:   3'- -CCUCGGGGgGCG------AgCGG-GGUGGGcGG- -5'
3925 5' -67.1 NC_001650.1 + 30230 0.66 0.518811
Target:  5'- cGAcCCCuCCCGCUCagaguauuucgagGCCCUgcaccccuCCCGCCc -3'
miRNA:   3'- cCUcGGG-GGGCGAG-------------CGGGGu-------GGGCGG- -5'
3925 5' -67.1 NC_001650.1 + 100517 0.66 0.517031
Target:  5'- -cAGCCCCUCGCUCuucucggggcagcgGCUCCucaGCCuCGCg -3'
miRNA:   3'- ccUCGGGGGGCGAG--------------CGGGG---UGG-GCGg -5'
3925 5' -67.1 NC_001650.1 + 105868 0.66 0.517031
Target:  5'- uGAGCCCCCC-CUCugucaggaugGCCUCccugaucucggccaGCuuGCCg -3'
miRNA:   3'- cCUCGGGGGGcGAG----------CGGGG--------------UGggCGG- -5'
3925 5' -67.1 NC_001650.1 + 136715 0.66 0.510819
Target:  5'- gGGGGUCCCCCaa-C-CCCCACCgUGUCa -3'
miRNA:   3'- -CCUCGGGGGGcgaGcGGGGUGG-GCGG- -5'
3925 5' -67.1 NC_001650.1 + 50308 0.66 0.510819
Target:  5'- cGAGCgCCCaaagcgCGcCUCGUCCCuCCCgGCCc -3'
miRNA:   3'- cCUCGgGGG------GC-GAGCGGGGuGGG-CGG- -5'
3925 5' -67.1 NC_001650.1 + 91811 0.66 0.510819
Target:  5'- uGAGCCCUgggCCGUggacUCGgccgagggacCCCCAccCCCGCCc -3'
miRNA:   3'- cCUCGGGG---GGCG----AGC----------GGGGU--GGGCGG- -5'
3925 5' -67.1 NC_001650.1 + 80354 0.66 0.510819
Target:  5'- cGGAGCCCaggcggcccuuCCCcaUC-CCCaccgaGCCCGCCa -3'
miRNA:   3'- -CCUCGGG-----------GGGcgAGcGGGg----UGGGCGG- -5'
3925 5' -67.1 NC_001650.1 + 156733 0.66 0.510819
Target:  5'- ---uCCCCgCCGC-CGCCCCgguuggagGCCUGCUu -3'
miRNA:   3'- ccucGGGG-GGCGaGCGGGG--------UGGGCGG- -5'
3925 5' -67.1 NC_001650.1 + 145435 0.66 0.510819
Target:  5'- -aAGUCCUCCGCccugaagucaUCuaugucCUCCACCCGCCu -3'
miRNA:   3'- ccUCGGGGGGCG----------AGc-----GGGGUGGGCGG- -5'
3925 5' -67.1 NC_001650.1 + 117783 0.66 0.510819
Target:  5'- cGGcGCCCucccccucuCCCGCU-GCCCCGgcacccuccccCUCGCCc -3'
miRNA:   3'- -CCuCGGG---------GGGCGAgCGGGGU-----------GGGCGG- -5'
3925 5' -67.1 NC_001650.1 + 55194 0.66 0.509934
Target:  5'- uGGcGUCCgcuaugaUCUGCUCGCCCgCGCCCucgaagGCCu -3'
miRNA:   3'- -CCuCGGG-------GGGCGAGCGGG-GUGGG------CGG- -5'
3925 5' -67.1 NC_001650.1 + 65058 0.66 0.509934
Target:  5'- -uGGCCCuCCUGCggGCCaugacggCCACCUGCUu -3'
miRNA:   3'- ccUCGGG-GGGCGagCGG-------GGUGGGCGG- -5'
3925 5' -67.1 NC_001650.1 + 157401 0.66 0.50905
Target:  5'- -cGGCCUUCUGCaggaacugguaGCCCUGCCUGCCc -3'
miRNA:   3'- ccUCGGGGGGCGag---------CGGGGUGGGCGG- -5'
3925 5' -67.1 NC_001650.1 + 160799 0.66 0.508167
Target:  5'- gGGGGUCUCCCaGgUCcaggGCUCCaucgaggaagggggGCCCGCCg -3'
miRNA:   3'- -CCUCGGGGGG-CgAG----CGGGG--------------UGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.