miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
393 3' -60.7 AC_000011.1 + 18051 0.66 0.36497
Target:  5'- uGGCUaagccCCUGCCGCCGGuGGccguggCccGCGCGc -3'
miRNA:   3'- -CCGA-----GGGCGGCGGCC-CCaa----Ga-UGUGC- -5'
393 3' -60.7 AC_000011.1 + 12730 0.67 0.308936
Target:  5'- aGGCUCgacaCCGUCGCgcgguccccgacCGGGGc-CUGCACGc -3'
miRNA:   3'- -CCGAG----GGCGGCG------------GCCCCaaGAUGUGC- -5'
393 3' -60.7 AC_000011.1 + 11147 0.67 0.302227
Target:  5'- gGGCUCCuCGCCGCUccugucucugaacaGGUUCUGCuuGg -3'
miRNA:   3'- -CCGAGG-GCGGCGGcc------------CCAAGAUGugC- -5'
393 3' -60.7 AC_000011.1 + 16565 0.68 0.279979
Target:  5'- cGGCg-CCG-CGCCgGGGGUUCaaGCGCGa -3'
miRNA:   3'- -CCGagGGCgGCGG-CCCCAAGa-UGUGC- -5'
393 3' -60.7 AC_000011.1 + 25049 0.68 0.246869
Target:  5'- uGGCUCCacaGCgGCgGGGGgcaCU-CGCGg -3'
miRNA:   3'- -CCGAGGg--CGgCGgCCCCaa-GAuGUGC- -5'
393 3' -60.7 AC_000011.1 + 16325 0.69 0.234561
Target:  5'- uGCaCgCGCCGCCGGGGggCgaacuCGCGc -3'
miRNA:   3'- cCGaGgGCGGCGGCCCCaaGau---GUGC- -5'
393 3' -60.7 AC_000011.1 + 15827 0.69 0.222773
Target:  5'- gGGCgaugCgCCGCCGCCGGc--UCUugGCGc -3'
miRNA:   3'- -CCGa---G-GGCGGCGGCCccaAGAugUGC- -5'
393 3' -60.7 AC_000011.1 + 15985 0.7 0.197565
Target:  5'- cGCUgCCGCCGCCGuggccgcgcgucuccGGGUcCUGC-CGg -3'
miRNA:   3'- cCGAgGGCGGCGGC---------------CCCAaGAUGuGC- -5'
393 3' -60.7 AC_000011.1 + 17306 0.71 0.166655
Target:  5'- uGGCgCgCCGCCGCCGGuGGUgguggCgACGCa -3'
miRNA:   3'- -CCGaG-GGCGGCGGCC-CCAa----GaUGUGc -5'
393 3' -60.7 AC_000011.1 + 23244 0.71 0.157923
Target:  5'- gGGCUCUCGCCGCCGcGa--CUugGCGg -3'
miRNA:   3'- -CCGAGGGCGGCGGCcCcaaGAugUGC- -5'
393 3' -60.7 AC_000011.1 + 11455 0.76 0.074696
Target:  5'- aGCggCuuGCUGgUGGGGUUCUGCACGa -3'
miRNA:   3'- cCGa-GggCGGCgGCCCCAAGAUGUGC- -5'
393 3' -60.7 AC_000011.1 + 13182 1.11 0.000151
Target:  5'- uGGCUCCCGCCGCCGGGGUUCUACACGg -3'
miRNA:   3'- -CCGAGGGCGGCGGCCCCAAGAUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.