miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
394 3' -57.4 AC_000011.1 + 13427 0.66 0.475099
Target:  5'- gGCGGCCucgGGC-ACCGCCgcggcagcacccUCgcgGCCGg -3'
miRNA:   3'- aCGUCGGca-UCGaUGGCGG------------AGa--UGGC- -5'
394 3' -57.4 AC_000011.1 + 28232 0.66 0.434635
Target:  5'- gGCAGCCcggggaccccgaGUGGUacACCGUCUCUGuccCCGg -3'
miRNA:   3'- aCGUCGG------------CAUCGa-UGGCGGAGAU---GGC- -5'
394 3' -57.4 AC_000011.1 + 8572 0.67 0.386987
Target:  5'- cGCGGCgccgaCGUGcccCUGCCGCCcCUGCCu -3'
miRNA:   3'- aCGUCG-----GCAUc--GAUGGCGGaGAUGGc -5'
394 3' -57.4 AC_000011.1 + 24416 0.67 0.386987
Target:  5'- cUGguGaCCGUggAGCUggagugccugcGCCGCUUCUucGCCGa -3'
miRNA:   3'- -ACguC-GGCA--UCGA-----------UGGCGGAGA--UGGC- -5'
394 3' -57.4 AC_000011.1 + 1012 0.67 0.386987
Target:  5'- uUGC-GCUGga-CUGcCCGCCUCUGCCc -3'
miRNA:   3'- -ACGuCGGCaucGAU-GGCGGAGAUGGc -5'
394 3' -57.4 AC_000011.1 + 23296 0.69 0.287488
Target:  5'- cGCGGCgGcgagAGCccgucgccuCCGCCUCUGCCc -3'
miRNA:   3'- aCGUCGgCa---UCGau-------GGCGGAGAUGGc -5'
394 3' -57.4 AC_000011.1 + 15190 0.7 0.265984
Target:  5'- aGCAgGCCGUcuacucgcagcAGCUGCgCGCCUUcACCu -3'
miRNA:   3'- aCGU-CGGCA-----------UCGAUG-GCGGAGaUGGc -5'
394 3' -57.4 AC_000011.1 + 15979 0.7 0.26529
Target:  5'- cGCcGCCGUGGCcGCgCGUCUCcggguccUGCCGg -3'
miRNA:   3'- aCGuCGGCAUCGaUG-GCGGAG-------AUGGC- -5'
394 3' -57.4 AC_000011.1 + 33812 0.72 0.192799
Target:  5'- cGCAGCaGUcGCUGCCGCCgccgCU-CCGu -3'
miRNA:   3'- aCGUCGgCAuCGAUGGCGGa---GAuGGC- -5'
394 3' -57.4 AC_000011.1 + 3666 0.76 0.094853
Target:  5'- cUGCcGCCGcAGCUGCUGCaUCUGCCGc -3'
miRNA:   3'- -ACGuCGGCaUCGAUGGCGgAGAUGGC- -5'
394 3' -57.4 AC_000011.1 + 14792 1.09 0.000326
Target:  5'- cUGCAGCCGUAGCUACCGCCUCUACCGa -3'
miRNA:   3'- -ACGUCGGCAUCGAUGGCGGAGAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.