miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3940 3' -51 NC_001650.1 + 52966 0.66 0.995134
Target:  5'- gAUGGGGGgccuccugcgcGUUGGGCACCAGggUCUc -3'
miRNA:   3'- -UAUUUCCa----------CAGCCUGUGGUCgaAGAc -5'
3940 3' -51 NC_001650.1 + 100161 0.66 0.99344
Target:  5'- ---cAGGUgGUCGucCACCAGCUUUUu -3'
miRNA:   3'- uauuUCCA-CAGCcuGUGGUCGAAGAc -5'
3940 3' -51 NC_001650.1 + 88715 0.66 0.991305
Target:  5'- -aGAGGGUG-CGGGCGCCGGg----- -3'
miRNA:   3'- uaUUUCCACaGCCUGUGGUCgaagac -5'
3940 3' -51 NC_001650.1 + 22430 0.67 0.988655
Target:  5'- -cAGAGGUGcUCGGGCGCgCccacccuccugGGCUUCg- -3'
miRNA:   3'- uaUUUCCAC-AGCCUGUG-G-----------UCGAAGac -5'
3940 3' -51 NC_001650.1 + 31451 0.67 0.987114
Target:  5'- cUGAGGGUGUgGGGCAgC-GCU-CUGu -3'
miRNA:   3'- uAUUUCCACAgCCUGUgGuCGAaGAC- -5'
3940 3' -51 NC_001650.1 + 127736 0.67 0.985416
Target:  5'- ---cAGG-GaUGGGCGCCAGCUgggCUGg -3'
miRNA:   3'- uauuUCCaCaGCCUGUGGUCGAa--GAC- -5'
3940 3' -51 NC_001650.1 + 25643 0.68 0.981515
Target:  5'- -gGAGGGUGUccaCGGACGCCuucgAGCUgggccgggugCUGa -3'
miRNA:   3'- uaUUUCCACA---GCCUGUGG----UCGAa---------GAC- -5'
3940 3' -51 NC_001650.1 + 105495 0.68 0.97688
Target:  5'- uUAcAGGUGUgGGACACaGGCUacgcgcaccugUCUGg -3'
miRNA:   3'- uAUuUCCACAgCCUGUGgUCGA-----------AGAC- -5'
3940 3' -51 NC_001650.1 + 63618 0.69 0.968405
Target:  5'- -cGGGGGUGcccUCGGGCGgCGGCUUUa- -3'
miRNA:   3'- uaUUUCCAC---AGCCUGUgGUCGAAGac -5'
3940 3' -51 NC_001650.1 + 76021 0.69 0.965143
Target:  5'- --cGAGGUcGUCacGCGCCAGCUUCUu -3'
miRNA:   3'- uauUUCCA-CAGccUGUGGUCGAAGAc -5'
3940 3' -51 NC_001650.1 + 66100 0.69 0.961652
Target:  5'- --cAAGGUGggCGGGCACCuGGCggggCUGu -3'
miRNA:   3'- uauUUCCACa-GCCUGUGG-UCGaa--GAC- -5'
3940 3' -51 NC_001650.1 + 27838 0.71 0.91317
Target:  5'- -cAGAGaaGUGUUGGugGCCGGCU-CUGu -3'
miRNA:   3'- uaUUUC--CACAGCCugUGGUCGAaGAC- -5'
3940 3' -51 NC_001650.1 + 69609 0.73 0.839805
Target:  5'- -aAGAGGUGuccUCGGugGCCAGCacCUGc -3'
miRNA:   3'- uaUUUCCAC---AGCCugUGGUCGaaGAC- -5'
3940 3' -51 NC_001650.1 + 90875 1.06 0.013105
Target:  5'- cAUAAAGGUGUCGGACACCAGCUUCUGu -3'
miRNA:   3'- -UAUUUCCACAGCCUGUGGUCGAAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.