miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3940 5' -58.8 NC_001650.1 + 50844 0.66 0.844884
Target:  5'- gCgAGGG-C-GGCgagcugcccuuucugCugGCGCAGCGCa -3'
miRNA:   3'- aGgUCCCaGaCCGa--------------GugCGUGUCGCG- -5'
3940 5' -58.8 NC_001650.1 + 103233 0.66 0.844101
Target:  5'- cUUCAGGaUCUGGCacuCGUACAGgGUg -3'
miRNA:   3'- -AGGUCCcAGACCGaguGCGUGUCgCG- -5'
3940 5' -58.8 NC_001650.1 + 120837 0.66 0.836172
Target:  5'- cCCAGagcaaacuGGagcgCUGGCUgGCGCucuccuacgcgGCGGCGCu -3'
miRNA:   3'- aGGUC--------CCa---GACCGAgUGCG-----------UGUCGCG- -5'
3940 5' -58.8 NC_001650.1 + 23314 0.66 0.836172
Target:  5'- gCCucGGG-CaGGgUCGCGCAgCAGUGCg -3'
miRNA:   3'- aGGu-CCCaGaCCgAGUGCGU-GUCGCG- -5'
3940 5' -58.8 NC_001650.1 + 122129 0.66 0.836172
Target:  5'- -gCGGGGUC-GGCUCGgGgGCGGgGg -3'
miRNA:   3'- agGUCCCAGaCCGAGUgCgUGUCgCg -5'
3940 5' -58.8 NC_001650.1 + 6090 0.66 0.828067
Target:  5'- ---uGGG-CUGGgUgGCGCGCGGCGa -3'
miRNA:   3'- agguCCCaGACCgAgUGCGUGUCGCg -5'
3940 5' -58.8 NC_001650.1 + 37167 0.66 0.828067
Target:  5'- uUCCAGGG-CaGGCgCAUGCugGagaacuccaaGCGCu -3'
miRNA:   3'- -AGGUCCCaGaCCGaGUGCGugU----------CGCG- -5'
3940 5' -58.8 NC_001650.1 + 172797 0.66 0.828067
Target:  5'- ---uGGG-CUGGgUgGCGCGCGGCGa -3'
miRNA:   3'- agguCCCaGACCgAgUGCGUGUCGCg -5'
3940 5' -58.8 NC_001650.1 + 73675 0.66 0.828067
Target:  5'- -gCGGGGgcggCUGuuGCUCGCGCGCc-CGCu -3'
miRNA:   3'- agGUCCCa---GAC--CGAGUGCGUGucGCG- -5'
3940 5' -58.8 NC_001650.1 + 22837 0.66 0.823123
Target:  5'- uUUCAGGG-CUGGCUUugGuuUguaagucuaaaucgaGCAGCGUa -3'
miRNA:   3'- -AGGUCCCaGACCGAGugC--G---------------UGUCGCG- -5'
3940 5' -58.8 NC_001650.1 + 55156 0.66 0.819794
Target:  5'- gUCCAGc--CUGGCggggUCGCGCGCGGC-Ca -3'
miRNA:   3'- -AGGUCccaGACCG----AGUGCGUGUCGcG- -5'
3940 5' -58.8 NC_001650.1 + 141241 0.66 0.819794
Target:  5'- cCCGGGGUCccccGGUUCGCccucggcccCGCGGCGg -3'
miRNA:   3'- aGGUCCCAGa---CCGAGUGc--------GUGUCGCg -5'
3940 5' -58.8 NC_001650.1 + 131559 0.66 0.819794
Target:  5'- gCUGGGGcgauuccgcUCgaGGCUCACGguCuGGCGCg -3'
miRNA:   3'- aGGUCCC---------AGa-CCGAGUGCguG-UCGCG- -5'
3940 5' -58.8 NC_001650.1 + 107511 0.66 0.819794
Target:  5'- -aCAGGGcgCUGuGCggCACGgACGGCGa -3'
miRNA:   3'- agGUCCCa-GAC-CGa-GUGCgUGUCGCg -5'
3940 5' -58.8 NC_001650.1 + 79696 0.66 0.819794
Target:  5'- gUCAGGGcCUGcGuCUCGgGCG-AGCGCg -3'
miRNA:   3'- aGGUCCCaGAC-C-GAGUgCGUgUCGCG- -5'
3940 5' -58.8 NC_001650.1 + 125829 0.66 0.811359
Target:  5'- cUCCuGGGUCcgaaguUGGUUgcgaaggcggugCACGCucgccaACAGCGCa -3'
miRNA:   3'- -AGGuCCCAG------ACCGA------------GUGCG------UGUCGCG- -5'
3940 5' -58.8 NC_001650.1 + 47931 0.66 0.811359
Target:  5'- cUCCAacaUCUGGCUCuuUGCugGGUGCg -3'
miRNA:   3'- -AGGUcccAGACCGAGu-GCGugUCGCG- -5'
3940 5' -58.8 NC_001650.1 + 35873 0.66 0.811359
Target:  5'- -gCGGGGgacCUGGaguuUCACGCGgGGCGg -3'
miRNA:   3'- agGUCCCa--GACCg---AGUGCGUgUCGCg -5'
3940 5' -58.8 NC_001650.1 + 109468 0.66 0.811359
Target:  5'- gCCcGGGUuggcCUGGUcUAUGUGCAGCGUg -3'
miRNA:   3'- aGGuCCCA----GACCGaGUGCGUGUCGCG- -5'
3940 5' -58.8 NC_001650.1 + 141796 0.66 0.808798
Target:  5'- gCCAGGGUuuuuuuuuaccaucCUGGUUCugGCAgAGaacucuGCc -3'
miRNA:   3'- aGGUCCCA--------------GACCGAGugCGUgUCg-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.