miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
395 5' -52.8 AC_000011.1 + 18574 0.66 0.760042
Target:  5'- uUUguACGAGUAGG-UGUUgcCUCGCg -3'
miRNA:   3'- gAAguUGCUCGUCCgGCAGauGAGCG- -5'
395 5' -52.8 AC_000011.1 + 25405 0.66 0.738341
Target:  5'- ---uGAUGAcGCAGGCCGaCaGCUCGg -3'
miRNA:   3'- gaagUUGCU-CGUCCGGCaGaUGAGCg -5'
395 5' -52.8 AC_000011.1 + 26390 0.66 0.738341
Target:  5'- --gCGACuGGGCGGGCgCGggCUACUCu- -3'
miRNA:   3'- gaaGUUG-CUCGUCCG-GCa-GAUGAGcg -5'
395 5' -52.8 AC_000011.1 + 3651 0.66 0.716171
Target:  5'- gUUCGcgggcugcACGGGCcGGCCGUCcAC-CGUg -3'
miRNA:   3'- gAAGU--------UGCUCGuCCGGCAGaUGaGCG- -5'
395 5' -52.8 AC_000011.1 + 21034 0.67 0.659384
Target:  5'- --gCGGCGucaucgAGGCCGUCUACcugCGCa -3'
miRNA:   3'- gaaGUUGCucg---UCCGGCAGAUGa--GCG- -5'
395 5' -52.8 AC_000011.1 + 16936 0.67 0.659384
Target:  5'- -aUCAGCaGGCuGGCCGcgCcgUACUUGCg -3'
miRNA:   3'- gaAGUUGcUCGuCCGGCa-G--AUGAGCG- -5'
395 5' -52.8 AC_000011.1 + 10219 0.68 0.613375
Target:  5'- --cCAcCGAGCGauGGCCGcUCUAC-CGCc -3'
miRNA:   3'- gaaGUuGCUCGU--CCGGC-AGAUGaGCG- -5'
395 5' -52.8 AC_000011.1 + 18349 0.7 0.511822
Target:  5'- -aUCGAUGGGguGGCCaUCUugcaACUCGg -3'
miRNA:   3'- gaAGUUGCUCguCCGGcAGA----UGAGCg -5'
395 5' -52.8 AC_000011.1 + 21439 0.71 0.448072
Target:  5'- --gCGGCGcAGCAGGCCcUCgUACUCGa -3'
miRNA:   3'- gaaGUUGC-UCGUCCGGcAG-AUGAGCg -5'
395 5' -52.8 AC_000011.1 + 24917 0.72 0.398461
Target:  5'- -cUCAuaaaguCGGGCAGGCCGUUg---CGCa -3'
miRNA:   3'- gaAGUu-----GCUCGUCCGGCAGaugaGCG- -5'
395 5' -52.8 AC_000011.1 + 15181 1.13 0.00059
Target:  5'- uCUUCAACGAGCAGGCCGUCUACUCGCa -3'
miRNA:   3'- -GAAGUUGCUCGUCCGGCAGAUGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.