miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3953 5' -64.3 NC_001650.1 + 72956 0.66 0.590358
Target:  5'- uGCU-GCGGGCgaGGCCCCagauUCUggCCCUg -3'
miRNA:   3'- gCGGuCGCCCG--UCGGGG----AGAa-GGGGu -5'
3953 5' -64.3 NC_001650.1 + 23397 0.66 0.590358
Target:  5'- -cUCGGCGGGC--CCCC-CUUCCUCGa -3'
miRNA:   3'- gcGGUCGCCCGucGGGGaGAAGGGGU- -5'
3953 5' -64.3 NC_001650.1 + 62084 0.66 0.590358
Target:  5'- gGCCauGGCugaGGGCGGUgccgguuucUCCUCUUCCuCCAc -3'
miRNA:   3'- gCGG--UCG---CCCGUCG---------GGGAGAAGG-GGU- -5'
3953 5' -64.3 NC_001650.1 + 43693 0.66 0.590358
Target:  5'- uGCCAGUGaGGCGGCCaCagggUCUgCCaCCAg -3'
miRNA:   3'- gCGGUCGC-CCGUCGG-Gg---AGAaGG-GGU- -5'
3953 5' -64.3 NC_001650.1 + 117776 0.66 0.580789
Target:  5'- aGCCGGUcGGCGcccucCCCCUCUcccgcugCCCCGg -3'
miRNA:   3'- gCGGUCGcCCGUc----GGGGAGAa------GGGGU- -5'
3953 5' -64.3 NC_001650.1 + 153742 0.66 0.580789
Target:  5'- gCGUCcGCGGGCGGgaugggcgagaCCCCcCUgagccgCCCCAg -3'
miRNA:   3'- -GCGGuCGCCCGUC-----------GGGGaGAa-----GGGGU- -5'
3953 5' -64.3 NC_001650.1 + 121595 0.66 0.580789
Target:  5'- gCGgCGGaGGGCAGCgCCCUCggguggCCCg- -3'
miRNA:   3'- -GCgGUCgCCCGUCG-GGGAGaa----GGGgu -5'
3953 5' -64.3 NC_001650.1 + 152187 0.66 0.577924
Target:  5'- aGCaccaGGgGGGCAGuCCCCUCguaggucagguacacCCCCu -3'
miRNA:   3'- gCGg---UCgCCCGUC-GGGGAGaa-------------GGGGu -5'
3953 5' -64.3 NC_001650.1 + 109225 0.66 0.571252
Target:  5'- aCGCCaAGCugGGGCuGagaaucauaaCCCCcCUUCCCCGc -3'
miRNA:   3'- -GCGG-UCG--CCCGuC----------GGGGaGAAGGGGU- -5'
3953 5' -64.3 NC_001650.1 + 139357 0.66 0.571252
Target:  5'- -aCCAGCGaGGCGGCCCUgaUUUaaaUCCCgGg -3'
miRNA:   3'- gcGGUCGC-CCGUCGGGG--AGA---AGGGgU- -5'
3953 5' -64.3 NC_001650.1 + 56956 0.66 0.561754
Target:  5'- aGUCAGaugcgguccCGGcGCGGCUCCUCUUUCUCu -3'
miRNA:   3'- gCGGUC---------GCC-CGUCGGGGAGAAGGGGu -5'
3953 5' -64.3 NC_001650.1 + 160966 0.66 0.561754
Target:  5'- aGCCcaccGUGGGguGCCUCaggaUCCCCAg -3'
miRNA:   3'- gCGGu---CGCCCguCGGGGaga-AGGGGU- -5'
3953 5' -64.3 NC_001650.1 + 108717 0.66 0.561754
Target:  5'- gGUC-GCGGGgGGCgucaaagacagCCUCUUCCCCGa -3'
miRNA:   3'- gCGGuCGCCCgUCGg----------GGAGAAGGGGU- -5'
3953 5' -64.3 NC_001650.1 + 149128 0.66 0.558913
Target:  5'- cCGCgAGgGGGCGGCCuuuuuaagaaagguCCUCUUgaCCAa -3'
miRNA:   3'- -GCGgUCgCCCGUCGG--------------GGAGAAggGGU- -5'
3953 5' -64.3 NC_001650.1 + 96647 0.66 0.552299
Target:  5'- aGUCAcuGUGGG-AGCCCggCUUCCCCu -3'
miRNA:   3'- gCGGU--CGCCCgUCGGGgaGAAGGGGu -5'
3953 5' -64.3 NC_001650.1 + 60292 0.66 0.552299
Target:  5'- gGCCGcUGGGCGGCgggCCUCUUguacuggucCCCCAg -3'
miRNA:   3'- gCGGUcGCCCGUCGg--GGAGAA---------GGGGU- -5'
3953 5' -64.3 NC_001650.1 + 51625 0.66 0.552299
Target:  5'- gCGCCuccGCGGGcCAGUUCUUgUUCUCCu -3'
miRNA:   3'- -GCGGu--CGCCC-GUCGGGGAgAAGGGGu -5'
3953 5' -64.3 NC_001650.1 + 95489 0.66 0.542892
Target:  5'- uGCCGGCcggGGGCuuccccgaggAGCCCCcUCccgCCCCc -3'
miRNA:   3'- gCGGUCG---CCCG----------UCGGGG-AGaa-GGGGu -5'
3953 5' -64.3 NC_001650.1 + 58221 0.66 0.542892
Target:  5'- uCGUCuagauuGGCGGGCAGCCCCUggacgCUggCCUu -3'
miRNA:   3'- -GCGG------UCGCCCGUCGGGGA-----GAagGGGu -5'
3953 5' -64.3 NC_001650.1 + 177756 0.66 0.542892
Target:  5'- -cCCucCGGGCAcacGCCCCUCUcuUUCCCAc -3'
miRNA:   3'- gcGGucGCCCGU---CGGGGAGA--AGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.