miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
396 5' -57.7 AC_000011.1 + 7104 0.66 0.490864
Target:  5'- aGCCCUUcuccACGg--GgAGGGCguaggCCUGGGCg -3'
miRNA:   3'- -CGGGGA----UGCagaUgUUCCG-----GGACCCG- -5'
396 5' -57.7 AC_000011.1 + 14045 0.66 0.470246
Target:  5'- cGCCCCUcCGUagGCGccAGGUaCCgcggGGGCa -3'
miRNA:   3'- -CGGGGAuGCAgaUGU--UCCG-GGa---CCCG- -5'
396 5' -57.7 AC_000011.1 + 12850 0.66 0.450079
Target:  5'- -aCCC-ACGUgaGCcgcGCCCUGGGCc -3'
miRNA:   3'- cgGGGaUGCAgaUGuucCGGGACCCG- -5'
396 5' -57.7 AC_000011.1 + 6599 0.66 0.450079
Target:  5'- cGCCCCUcaGUCccUACGAGGCgCgCUGGccguGCg -3'
miRNA:   3'- -CGGGGAugCAG--AUGUUCCG-G-GACC----CG- -5'
396 5' -57.7 AC_000011.1 + 24620 0.66 0.450079
Target:  5'- -aCCCUGCG-CgGgGAGGCCC-GGcGCg -3'
miRNA:   3'- cgGGGAUGCaGaUgUUCCGGGaCC-CG- -5'
396 5' -57.7 AC_000011.1 + 6788 0.66 0.439192
Target:  5'- aGCCCa---GUC-GCAccaaccuGGGCCCgGGGCu -3'
miRNA:   3'- -CGGGgaugCAGaUGU-------UCCGGGaCCCG- -5'
396 5' -57.7 AC_000011.1 + 11806 0.67 0.430397
Target:  5'- aGCUgaUGCauaGUCUGCAgcGGGCCCUgaccgGGGCc -3'
miRNA:   3'- -CGGggAUG---CAGAUGU--UCCGGGA-----CCCG- -5'
396 5' -57.7 AC_000011.1 + 11325 0.67 0.430397
Target:  5'- cGCaCCCUGa-UCgcgcGCGAGGaggugaCCCUGGGCc -3'
miRNA:   3'- -CG-GGGAUgcAGa---UGUUCC------GGGACCCG- -5'
396 5' -57.7 AC_000011.1 + 22294 0.67 0.420747
Target:  5'- uGCCUgaACGcCUGCuGGGCCUU-GGCu -3'
miRNA:   3'- -CGGGgaUGCaGAUGuUCCGGGAcCCG- -5'
396 5' -57.7 AC_000011.1 + 18057 0.68 0.370981
Target:  5'- aGCCCCUGcCGcCggugGCcguGGCCCgcgcgcgacccggGGGCa -3'
miRNA:   3'- -CGGGGAU-GCaGa---UGuu-CCGGGa------------CCCG- -5'
396 5' -57.7 AC_000011.1 + 25414 0.68 0.369217
Target:  5'- cCCCCUGgGUgaugacgcaggccgaCaGCucGGCCUUGGGCg -3'
miRNA:   3'- cGGGGAUgCA---------------GaUGuuCCGGGACCCG- -5'
396 5' -57.7 AC_000011.1 + 3877 0.68 0.357027
Target:  5'- cGCCCagGCG-CUGgguCAAGGCCucgagCUGGGCc -3'
miRNA:   3'- -CGGGgaUGCaGAU---GUUCCGG-----GACCCG- -5'
396 5' -57.7 AC_000011.1 + 430 0.68 0.339278
Target:  5'- aCCCCcACGuaaucggucaaagUCUACucGGCCCUcGGCa -3'
miRNA:   3'- cGGGGaUGC-------------AGAUGuuCCGGGAcCCG- -5'
396 5' -57.7 AC_000011.1 + 13604 0.69 0.323779
Target:  5'- uCCCCggGCGUC-GCAggGGGCCaCgagccgGGGCa -3'
miRNA:   3'- cGGGGa-UGCAGaUGU--UCCGG-Ga-----CCCG- -5'
396 5' -57.7 AC_000011.1 + 24022 0.7 0.288464
Target:  5'- cGCCuCCUugGaagagguucccaagaUCUuCGAGGgUCUGGGCa -3'
miRNA:   3'- -CGG-GGAugC---------------AGAuGUUCCgGGACCCG- -5'
396 5' -57.7 AC_000011.1 + 16788 0.7 0.278334
Target:  5'- uGUCCacg-GUCUGCAcgcccAGGCCCgGGGCc -3'
miRNA:   3'- -CGGGgaugCAGAUGU-----UCCGGGaCCCG- -5'
396 5' -57.7 AC_000011.1 + 3521 0.7 0.264357
Target:  5'- aGCCCUUA--UCUgACGGGGCgucuccccuCCUGGGCg -3'
miRNA:   3'- -CGGGGAUgcAGA-UGUUCCG---------GGACCCG- -5'
396 5' -57.7 AC_000011.1 + 6668 0.71 0.214093
Target:  5'- aGCCCCUcuACGUCUACGAca-UCUGcGGCa -3'
miRNA:   3'- -CGGGGA--UGCAGAUGUUccgGGAC-CCG- -5'
396 5' -57.7 AC_000011.1 + 15905 0.73 0.163003
Target:  5'- uGgCCCUGCGUCccgUGCGccuGGCCCUGcGCa -3'
miRNA:   3'- -CgGGGAUGCAG---AUGUu--CCGGGACcCG- -5'
396 5' -57.7 AC_000011.1 + 15408 1.14 0.000153
Target:  5'- uGCCCCUACGUCUACAAGGCCCUGGGCa -3'
miRNA:   3'- -CGGGGAUGCAGAUGUUCCGGGACCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.