miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3961 3' -58.2 NC_001650.1 + 52631 0.66 0.897018
Target:  5'- aCUGGCG-GUgGGucacgggcaggaccuCGGCCUCGGGguuucUCCGCc -3'
miRNA:   3'- -GACCGCgCA-CU---------------GCUGGAGCUC-----AGGCG- -5'
3961 3' -58.2 NC_001650.1 + 136165 0.66 0.894499
Target:  5'- -aGGCGCcccccGCGGCCUCGAccccgacCCGCa -3'
miRNA:   3'- gaCCGCGcac--UGCUGGAGCUca-----GGCG- -5'
3961 3' -58.2 NC_001650.1 + 50323 0.66 0.894499
Target:  5'- uCUGGgcgcCGCGgucccaggGGCGGCCUCuaGAGgcgaCCGCu -3'
miRNA:   3'- -GACC----GCGCa-------CUGCUGGAG--CUCa---GGCG- -5'
3961 3' -58.2 NC_001650.1 + 56149 0.66 0.894499
Target:  5'- -aGGaucccCGCGUaGCc-CCUCGGGUCCGCc -3'
miRNA:   3'- gaCC-----GCGCAcUGcuGGAGCUCAGGCG- -5'
3961 3' -58.2 NC_001650.1 + 147047 0.66 0.888054
Target:  5'- uUGGUGUGgugGGCGuuUUUGGGUCgCGCu -3'
miRNA:   3'- gACCGCGCa--CUGCugGAGCUCAG-GCG- -5'
3961 3' -58.2 NC_001650.1 + 23999 0.66 0.886079
Target:  5'- gCUGGCGCGcgccguccugcaccUGAgGGCCaaGAGgcuggCCGUc -3'
miRNA:   3'- -GACCGCGC--------------ACUgCUGGagCUCa----GGCG- -5'
3961 3' -58.2 NC_001650.1 + 121080 0.66 0.8814
Target:  5'- -cGGCGCGgggGGCGcccguCCUgGGGuUCCGg -3'
miRNA:   3'- gaCCGCGCa--CUGCu----GGAgCUC-AGGCg -5'
3961 3' -58.2 NC_001650.1 + 54276 0.66 0.874542
Target:  5'- -aGGgGCGUGcccgccACaGCCUCGuacacGUCCGCc -3'
miRNA:   3'- gaCCgCGCAC------UGcUGGAGCu----CAGGCG- -5'
3961 3' -58.2 NC_001650.1 + 92301 0.66 0.874542
Target:  5'- aUGGa-CGUGACGGUCUCGAG-CaCGCu -3'
miRNA:   3'- gACCgcGCACUGCUGGAGCUCaG-GCG- -5'
3961 3' -58.2 NC_001650.1 + 137910 0.66 0.867484
Target:  5'- -cGGCGC--GAUGACUUCG-G-CCGCa -3'
miRNA:   3'- gaCCGCGcaCUGCUGGAGCuCaGGCG- -5'
3961 3' -58.2 NC_001650.1 + 52767 0.67 0.858758
Target:  5'- gCUGGCGCGguaggcguccagGACGcCCUgcacgUGGG-CCGCu -3'
miRNA:   3'- -GACCGCGCa-----------CUGCuGGA-----GCUCaGGCG- -5'
3961 3' -58.2 NC_001650.1 + 131451 0.67 0.852788
Target:  5'- -gGGCGUccugGACGccuACCgcgccagcaggaUCGGGUCCGCg -3'
miRNA:   3'- gaCCGCGca--CUGC---UGG------------AGCUCAGGCG- -5'
3961 3' -58.2 NC_001650.1 + 90275 0.67 0.852788
Target:  5'- cCUGGCGU----CGGCCUCGgcGGUCgCGCc -3'
miRNA:   3'- -GACCGCGcacuGCUGGAGC--UCAG-GCG- -5'
3961 3' -58.2 NC_001650.1 + 105432 0.67 0.852788
Target:  5'- -cGGuCGCGgcGGCGAUCUCGuccCCGCu -3'
miRNA:   3'- gaCC-GCGCa-CUGCUGGAGCucaGGCG- -5'
3961 3' -58.2 NC_001650.1 + 73026 0.67 0.845161
Target:  5'- -gGGCGCG-GGCcGCCU-GAG-CCGCc -3'
miRNA:   3'- gaCCGCGCaCUGcUGGAgCUCaGGCG- -5'
3961 3' -58.2 NC_001650.1 + 27612 0.67 0.845161
Target:  5'- -gGGCG-GUGAUGGCCUgcaggGAGUuCUGCg -3'
miRNA:   3'- gaCCGCgCACUGCUGGAg----CUCA-GGCG- -5'
3961 3' -58.2 NC_001650.1 + 120554 0.67 0.837355
Target:  5'- -gGGCGCGguggGGCuucuGACCUCG-G-CCGUg -3'
miRNA:   3'- gaCCGCGCa---CUG----CUGGAGCuCaGGCG- -5'
3961 3' -58.2 NC_001650.1 + 121672 0.68 0.804478
Target:  5'- cCUGGCgGCcaccuucaaGGCGGCCUCaGAGUCCa- -3'
miRNA:   3'- -GACCG-CGca-------CUGCUGGAG-CUCAGGcg -5'
3961 3' -58.2 NC_001650.1 + 96255 0.68 0.804478
Target:  5'- gCUGGUcauccuGgGUGGCGACC-CG-GUCCGg -3'
miRNA:   3'- -GACCG------CgCACUGCUGGaGCuCAGGCg -5'
3961 3' -58.2 NC_001650.1 + 161057 0.68 0.804478
Target:  5'- -gGGCGCG-GugGGCCUguagGAGgccgucCCGCa -3'
miRNA:   3'- gaCCGCGCaCugCUGGAg---CUCa-----GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.