miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3962 3' -54.4 NC_001650.1 + 52017 0.66 0.960909
Target:  5'- -cGCGCAgCaGGCaCCCCACGGCcaccUCGAa -3'
miRNA:   3'- gaCGCGU-GcUUG-GGGGUGUUGu---AGCU- -5'
3962 3' -54.4 NC_001650.1 + 109550 0.66 0.957287
Target:  5'- aUGUuCACGu-CCCCCACGuugGCGUCGc -3'
miRNA:   3'- gACGcGUGCuuGGGGGUGU---UGUAGCu -5'
3962 3' -54.4 NC_001650.1 + 122290 0.67 0.953442
Target:  5'- --cUGCAC--GCCCCCGCGGCGcgCGAg -3'
miRNA:   3'- gacGCGUGcuUGGGGGUGUUGUa-GCU- -5'
3962 3' -54.4 NC_001650.1 + 71425 0.67 0.953442
Target:  5'- -aGCGCAUGGAggCCCACGGgcUCGAg -3'
miRNA:   3'- gaCGCGUGCUUggGGGUGUUguAGCU- -5'
3962 3' -54.4 NC_001650.1 + 95228 0.67 0.953442
Target:  5'- ---aGCGCGAcCCCUCGCGGCAggccgCGGg -3'
miRNA:   3'- gacgCGUGCUuGGGGGUGUUGUa----GCU- -5'
3962 3' -54.4 NC_001650.1 + 124869 0.67 0.949371
Target:  5'- gCUGCGCccuGCGGcgcuccuCCCCCAgCAucuCGUCGGu -3'
miRNA:   3'- -GACGCG---UGCUu------GGGGGU-GUu--GUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 75293 0.67 0.948951
Target:  5'- -gGCGCGCGcAaaccuggaacagcGCCCCCcuGCGGCcgCGGa -3'
miRNA:   3'- gaCGCGUGC-U-------------UGGGGG--UGUUGuaGCU- -5'
3962 3' -54.4 NC_001650.1 + 82870 0.67 0.945069
Target:  5'- -aGCGCGCcuGCCCCCcgACAGgGUCu- -3'
miRNA:   3'- gaCGCGUGcuUGGGGG--UGUUgUAGcu -5'
3962 3' -54.4 NC_001650.1 + 164814 0.67 0.945069
Target:  5'- -gGCGgcCGCGAgcagACCCCCGCGGCAa--- -3'
miRNA:   3'- gaCGC--GUGCU----UGGGGGUGUUGUagcu -5'
3962 3' -54.4 NC_001650.1 + 133229 0.67 0.940535
Target:  5'- -cGCGCcccCGucCCCCCGCAGC-UCGc -3'
miRNA:   3'- gaCGCGu--GCuuGGGGGUGUUGuAGCu -5'
3962 3' -54.4 NC_001650.1 + 146639 0.67 0.940535
Target:  5'- aUGCGC-CGcAUCCCCACA-CuUCGGg -3'
miRNA:   3'- gACGCGuGCuUGGGGGUGUuGuAGCU- -5'
3962 3' -54.4 NC_001650.1 + 53930 0.67 0.940535
Target:  5'- -gGCGUugGccucCCCCCGCGAgGUCu- -3'
miRNA:   3'- gaCGCGugCuu--GGGGGUGUUgUAGcu -5'
3962 3' -54.4 NC_001650.1 + 42589 0.67 0.940535
Target:  5'- -cGCGCGgGGGCCCCCGaGGC--CGAa -3'
miRNA:   3'- gaCGCGUgCUUGGGGGUgUUGuaGCU- -5'
3962 3' -54.4 NC_001650.1 + 137840 0.68 0.930761
Target:  5'- -gGCGCAucUGGugCCCCGCGGC--CGAu -3'
miRNA:   3'- gaCGCGU--GCUugGGGGUGUUGuaGCU- -5'
3962 3' -54.4 NC_001650.1 + 64392 0.68 0.927644
Target:  5'- gCUGgGCGCGGACgccgcgCCCCACAcccacaggauuagucACAUCu- -3'
miRNA:   3'- -GACgCGUGCUUG------GGGGUGU---------------UGUAGcu -5'
3962 3' -54.4 NC_001650.1 + 29446 0.68 0.925518
Target:  5'- -aGCG-ACGGggacaACCCCCACGugAUCa- -3'
miRNA:   3'- gaCGCgUGCU-----UGGGGGUGUugUAGcu -5'
3962 3' -54.4 NC_001650.1 + 134481 0.68 0.920038
Target:  5'- -cGgGCACGGugCCCCuaaaaaACAuucCAUCGAc -3'
miRNA:   3'- gaCgCGUGCUugGGGG------UGUu--GUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 59854 0.68 0.913737
Target:  5'- aUGgGCGCGAcCCCCgGCGAUAcuguuuuUCGGg -3'
miRNA:   3'- gACgCGUGCUuGGGGgUGUUGU-------AGCU- -5'
3962 3' -54.4 NC_001650.1 + 78963 0.68 0.90837
Target:  5'- -gGCGCA-GAugCCCCGCGGCccagagagCGAg -3'
miRNA:   3'- gaCGCGUgCUugGGGGUGUUGua------GCU- -5'
3962 3' -54.4 NC_001650.1 + 22638 0.68 0.90837
Target:  5'- -aGCGCGCGGggggcgcguacGCCUCgCACGACAgCGGc -3'
miRNA:   3'- gaCGCGUGCU-----------UGGGG-GUGUUGUaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.