miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3964 3' -63.4 NC_001650.1 + 33893 0.66 0.673342
Target:  5'- aCCUGGCCCaGaAGUGGGAaaauGGCCu-- -3'
miRNA:   3'- gGGGCCGGG-C-UCACCCUgc--UCGGcau -5'
3964 3' -63.4 NC_001650.1 + 165447 0.66 0.673342
Target:  5'- aCCCuGCCCGGGgagGGGaggaagGCGAGCgGc- -3'
miRNA:   3'- gGGGcCGGGCUCa--CCC------UGCUCGgCau -5'
3964 3' -63.4 NC_001650.1 + 26731 0.66 0.673342
Target:  5'- gCCgGGCCCGGccuGGAgGGGCUGUGc -3'
miRNA:   3'- gGGgCCGGGCUcacCCUgCUCGGCAU- -5'
3964 3' -63.4 NC_001650.1 + 52072 0.66 0.663837
Target:  5'- cCCgCCGGCCUcGGUGGGGCccaGGgUGUAg -3'
miRNA:   3'- -GG-GGCCGGGcUCACCCUGc--UCgGCAU- -5'
3964 3' -63.4 NC_001650.1 + 147345 0.66 0.663837
Target:  5'- gCCCGGCCCGAGgugcGGGuGCaGGCa--- -3'
miRNA:   3'- gGGGCCGGGCUCa---CCC-UGcUCGgcau -5'
3964 3' -63.4 NC_001650.1 + 145954 0.66 0.663837
Target:  5'- gCCCGGCCCGGGcGaGGAaguccCGGGacCCGUu -3'
miRNA:   3'- gGGGCCGGGCUCaC-CCU-----GCUC--GGCAu -5'
3964 3' -63.4 NC_001650.1 + 121964 0.66 0.663837
Target:  5'- uCCCCGaGCUgGAGgccaugcugcgGGGGCGGGUCa-- -3'
miRNA:   3'- -GGGGC-CGGgCUCa----------CCCUGCUCGGcau -5'
3964 3' -63.4 NC_001650.1 + 2417 0.66 0.662885
Target:  5'- aCCCuGCCCGGGUcuguaaagaggaaGcGGGCGGGgCCGUc -3'
miRNA:   3'- gGGGcCGGGCUCA-------------C-CCUGCUC-GGCAu -5'
3964 3' -63.4 NC_001650.1 + 169124 0.66 0.662885
Target:  5'- aCCCuGCCCGGGUcuguaaagaggaaGcGGGCGGGgCCGUc -3'
miRNA:   3'- gGGGcCGGGCUCA-------------C-CCUGCUC-GGCAu -5'
3964 3' -63.4 NC_001650.1 + 121931 0.66 0.654311
Target:  5'- aCUuuGcGCCCGAGUucgcGCGGGCCGUGc -3'
miRNA:   3'- -GGggC-CGGGCUCAccc-UGCUCGGCAU- -5'
3964 3' -63.4 NC_001650.1 + 93283 0.66 0.654311
Target:  5'- uCCCCGGUgCuGGUuaGGGACGGggcGCUGUGc -3'
miRNA:   3'- -GGGGCCGgGcUCA--CCCUGCU---CGGCAU- -5'
3964 3' -63.4 NC_001650.1 + 160692 0.66 0.654311
Target:  5'- gCCCCGGCCuCGGGguagaagGGGAaGA-CCGa- -3'
miRNA:   3'- -GGGGCCGG-GCUCa------CCCUgCUcGGCau -5'
3964 3' -63.4 NC_001650.1 + 66394 0.66 0.644769
Target:  5'- gCCCgCGuGCCUGAGggcgaGGGGCGAgggggaggguGCCGg- -3'
miRNA:   3'- -GGG-GC-CGGGCUCa----CCCUGCU----------CGGCau -5'
3964 3' -63.4 NC_001650.1 + 35262 0.66 0.644769
Target:  5'- gCCUGuggaGCgCGGGUGGGcgggGCGGGCCGg- -3'
miRNA:   3'- gGGGC----CGgGCUCACCC----UGCUCGGCau -5'
3964 3' -63.4 NC_001650.1 + 134581 0.66 0.625665
Target:  5'- cCCCCaGGCCUGGuuGUagaGGGGCGAGauGUAc -3'
miRNA:   3'- -GGGG-CCGGGCU--CA---CCCUGCUCggCAU- -5'
3964 3' -63.4 NC_001650.1 + 136745 0.66 0.625665
Target:  5'- aCCCCGGCCacuGAGauuuaggGGGGCGAGg-GUGa -3'
miRNA:   3'- -GGGGCCGGg--CUCa------CCCUGCUCggCAU- -5'
3964 3' -63.4 NC_001650.1 + 57738 0.66 0.6228
Target:  5'- gCCCGGCCUcgcgGGGUGGGcgACGGgggaguagcccggcGCCGg- -3'
miRNA:   3'- gGGGCCGGG----CUCACCC--UGCU--------------CGGCau -5'
3964 3' -63.4 NC_001650.1 + 54544 0.67 0.616117
Target:  5'- gCCCCGGgagggUCGAGgacaGGGugGAGCCc-- -3'
miRNA:   3'- -GGGGCCg----GGCUCa---CCCugCUCGGcau -5'
3964 3' -63.4 NC_001650.1 + 158821 0.67 0.616117
Target:  5'- gCCgCGaGCCCGAGUgugacGGGACGGGagCGg- -3'
miRNA:   3'- -GGgGC-CGGGCUCA-----CCCUGCUCg-GCau -5'
3964 3' -63.4 NC_001650.1 + 105970 0.67 0.616117
Target:  5'- -aCCGGCCCcAGUacucGGACGAcGCCGg- -3'
miRNA:   3'- ggGGCCGGGcUCAc---CCUGCU-CGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.