miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3964 3' -63.4 NC_001650.1 + 109172 1.07 0.001178
Target:  5'- cCCCCGGCCCGAGUGGGACGAGCCGUAc -3'
miRNA:   3'- -GGGGCCGGGCUCACCCUGCUCGGCAU- -5'
3964 3' -63.4 NC_001650.1 + 108823 0.82 0.068852
Target:  5'- aCCUGGCCCGcgcGUGGGAgCGGGCCGUGc -3'
miRNA:   3'- gGGGCCGGGCu--CACCCU-GCUCGGCAU- -5'
3964 3' -63.4 NC_001650.1 + 128264 0.77 0.147482
Target:  5'- gCCCGuGCCCGAGgGGGugGGGCCc-- -3'
miRNA:   3'- gGGGC-CGGGCUCaCCCugCUCGGcau -5'
3964 3' -63.4 NC_001650.1 + 28436 0.73 0.281182
Target:  5'- cCCCCGGgCggCGGGUgGGGGCG-GCCGUGc -3'
miRNA:   3'- -GGGGCCgG--GCUCA-CCCUGCuCGGCAU- -5'
3964 3' -63.4 NC_001650.1 + 155663 0.73 0.293723
Target:  5'- cCCCCaGCCCGucccGGGACGAGgCCGg- -3'
miRNA:   3'- -GGGGcCGGGCuca-CCCUGCUC-GGCau -5'
3964 3' -63.4 NC_001650.1 + 129302 0.72 0.306695
Target:  5'- cCCCCGGCcgcCCGAGcGaGGccGCGAGCCGg- -3'
miRNA:   3'- -GGGGCCG---GGCUCaC-CC--UGCUCGGCau -5'
3964 3' -63.4 NC_001650.1 + 50834 0.72 0.313344
Target:  5'- gCCCCGGCgCgCGAG-GGcGGCGAGCUGc- -3'
miRNA:   3'- -GGGGCCG-G-GCUCaCC-CUGCUCGGCau -5'
3964 3' -63.4 NC_001650.1 + 66867 0.71 0.348216
Target:  5'- gCCgcgggaGGCgCCGGGggcgGGGGCGAGCCGg- -3'
miRNA:   3'- gGGg-----CCG-GGCUCa---CCCUGCUCGGCau -5'
3964 3' -63.4 NC_001650.1 + 88744 0.71 0.355515
Target:  5'- cCCCCGGCCgGcaAGcGGGGCaGGCCGa- -3'
miRNA:   3'- -GGGGCCGGgC--UCaCCCUGcUCGGCau -5'
3964 3' -63.4 NC_001650.1 + 27094 0.7 0.393598
Target:  5'- gCCUGGCCCaggcgcucaGGGUcaGGGACGuGCCGg- -3'
miRNA:   3'- gGGGCCGGG---------CUCA--CCCUGCuCGGCau -5'
3964 3' -63.4 NC_001650.1 + 129129 0.7 0.407941
Target:  5'- cCCCCGcGCCCGGGgccgaggacacgGGGGCG-GCCc-- -3'
miRNA:   3'- -GGGGC-CGGGCUCa-----------CCCUGCuCGGcau -5'
3964 3' -63.4 NC_001650.1 + 131635 0.7 0.409554
Target:  5'- aCCCGGCCCGAGcu-GGCG-GCCGc- -3'
miRNA:   3'- gGGGCCGGGCUCaccCUGCuCGGCau -5'
3964 3' -63.4 NC_001650.1 + 28553 0.7 0.425908
Target:  5'- aCCUGGCCuCGucccGGGACGGGCUGg- -3'
miRNA:   3'- gGGGCCGG-GCuca-CCCUGCUCGGCau -5'
3964 3' -63.4 NC_001650.1 + 126818 0.7 0.434229
Target:  5'- gCCCGGgCCGcagggGGUGGGG-GAGCCGc- -3'
miRNA:   3'- gGGGCCgGGC-----UCACCCUgCUCGGCau -5'
3964 3' -63.4 NC_001650.1 + 38278 0.69 0.459744
Target:  5'- gCCCGGgCCGGGcUGGGGCacaggGAGCCc-- -3'
miRNA:   3'- gGGGCCgGGCUC-ACCCUG-----CUCGGcau -5'
3964 3' -63.4 NC_001650.1 + 141192 0.69 0.468424
Target:  5'- aCCCCGGCCCGccggacccuGGaaGGGAUGAGaUCGg- -3'
miRNA:   3'- -GGGGCCGGGC---------UCa-CCCUGCUC-GGCau -5'
3964 3' -63.4 NC_001650.1 + 65945 0.69 0.477188
Target:  5'- uUCUGGCCuacgaCGAGaGGGACGGGCUGg- -3'
miRNA:   3'- gGGGCCGG-----GCUCaCCCUGCUCGGCau -5'
3964 3' -63.4 NC_001650.1 + 158897 0.69 0.486033
Target:  5'- -gCCGGCCCGAGgGGGAgGAcuuaCGUAa -3'
miRNA:   3'- ggGGCCGGGCUCaCCCUgCUcg--GCAU- -5'
3964 3' -63.4 NC_001650.1 + 56446 0.68 0.50395
Target:  5'- uUCuuGGCCUuggagGGGUGGGcCGGGcCCGUGa -3'
miRNA:   3'- -GGggCCGGG-----CUCACCCuGCUC-GGCAU- -5'
3964 3' -63.4 NC_001650.1 + 52797 0.68 0.531341
Target:  5'- gCCCUcggGGCCCGGGcgcaGGACGGGCgCGg- -3'
miRNA:   3'- -GGGG---CCGGGCUCac--CCUGCUCG-GCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.