miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3964 3' -63.4 NC_001650.1 + 170878 0.67 0.606579
Target:  5'- uCCCCGGCCUcccauuGGACGGGCCc-- -3'
miRNA:   3'- -GGGGCCGGGcucac-CCUGCUCGGcau -5'
3964 3' -63.4 NC_001650.1 + 4171 0.67 0.606579
Target:  5'- uCCCCGGCCUcccauuGGACGGGCCc-- -3'
miRNA:   3'- -GGGGCCGGGcucac-CCUGCUCGGcau -5'
3964 3' -63.4 NC_001650.1 + 131194 0.67 0.597057
Target:  5'- uCCCCGGCCCG-GUGGcuggaGACcaGGCCc-- -3'
miRNA:   3'- -GGGGCCGGGCuCACC-----CUGc-UCGGcau -5'
3964 3' -63.4 NC_001650.1 + 164446 0.67 0.597057
Target:  5'- cCCCCGGCUCacccGGGAgGGGCUGa- -3'
miRNA:   3'- -GGGGCCGGGcucaCCCUgCUCGGCau -5'
3964 3' -63.4 NC_001650.1 + 82221 0.67 0.587558
Target:  5'- aCCCCGGuacuuCCCGcGaUGGGAaCGAgcgugGCCGUAg -3'
miRNA:   3'- -GGGGCC-----GGGCuC-ACCCU-GCU-----CGGCAU- -5'
3964 3' -63.4 NC_001650.1 + 15490 0.67 0.584714
Target:  5'- cCCCUGGCCUccauggccaaugggGAGaGGGugG-GCCGg- -3'
miRNA:   3'- -GGGGCCGGG--------------CUCaCCCugCuCGGCau -5'
3964 3' -63.4 NC_001650.1 + 182197 0.67 0.584714
Target:  5'- cCCCUGGCCUccauggccaaugggGAGaGGGugG-GCCGg- -3'
miRNA:   3'- -GGGGCCGGG--------------CUCaCCCugCuCGGCau -5'
3964 3' -63.4 NC_001650.1 + 50033 0.67 0.56865
Target:  5'- gCCCgGGCCUGAG-GGGGCuuuGGGUCa-- -3'
miRNA:   3'- -GGGgCCGGGCUCaCCCUG---CUCGGcau -5'
3964 3' -63.4 NC_001650.1 + 89172 0.67 0.56865
Target:  5'- gUCCUGuGCCCGGGgcuccggGGcGACGAGaUCGUGa -3'
miRNA:   3'- -GGGGC-CGGGCUCa------CC-CUGCUC-GGCAU- -5'
3964 3' -63.4 NC_001650.1 + 25870 0.67 0.56865
Target:  5'- aCCCCGGCcgCCGAGgGGGGCGccuuuGUCa-- -3'
miRNA:   3'- -GGGGCCG--GGCUCaCCCUGCu----CGGcau -5'
3964 3' -63.4 NC_001650.1 + 95730 0.67 0.563006
Target:  5'- gUuuGGCCCGGGgcgGGGaaacuccccgcgccaGCGAGCUGg- -3'
miRNA:   3'- gGggCCGGGCUCa--CCC---------------UGCUCGGCau -5'
3964 3' -63.4 NC_001650.1 + 133898 0.67 0.559252
Target:  5'- gCCgGGgCCGGGaGGGACGAGgCGc- -3'
miRNA:   3'- gGGgCCgGGCUCaCCCUGCUCgGCau -5'
3964 3' -63.4 NC_001650.1 + 131374 0.68 0.549898
Target:  5'- aCUCUGGCCaaGAGgcuggGGGugGAGCUGc- -3'
miRNA:   3'- -GGGGCCGGg-CUCa----CCCugCUCGGCau -5'
3964 3' -63.4 NC_001650.1 + 57539 0.68 0.540593
Target:  5'- gCgCCGGCUgGGGcUGGGGCuGGGCCuGUGg -3'
miRNA:   3'- -GgGGCCGGgCUC-ACCCUG-CUCGG-CAU- -5'
3964 3' -63.4 NC_001650.1 + 177394 0.68 0.531341
Target:  5'- cCCCUGGCCCaauGGGUGGcAgGGGCCu-- -3'
miRNA:   3'- -GGGGCCGGG---CUCACCcUgCUCGGcau -5'
3964 3' -63.4 NC_001650.1 + 52797 0.68 0.531341
Target:  5'- gCCCUcggGGCCCGGGcgcaGGACGGGCgCGg- -3'
miRNA:   3'- -GGGG---CCGGGCUCac--CCUGCUCG-GCau -5'
3964 3' -63.4 NC_001650.1 + 10687 0.68 0.531341
Target:  5'- cCCCUGGCCCaauGGGUGGcAgGGGCCu-- -3'
miRNA:   3'- -GGGGCCGGG---CUCACCcUgCUCGGcau -5'
3964 3' -63.4 NC_001650.1 + 56446 0.68 0.50395
Target:  5'- uUCuuGGCCUuggagGGGUGGGcCGGGcCCGUGa -3'
miRNA:   3'- -GGggCCGGG-----CUCACCCuGCUC-GGCAU- -5'
3964 3' -63.4 NC_001650.1 + 158897 0.69 0.486033
Target:  5'- -gCCGGCCCGAGgGGGAgGAcuuaCGUAa -3'
miRNA:   3'- ggGGCCGGGCUCaCCCUgCUcg--GCAU- -5'
3964 3' -63.4 NC_001650.1 + 65945 0.69 0.477188
Target:  5'- uUCUGGCCuacgaCGAGaGGGACGGGCUGg- -3'
miRNA:   3'- gGGGCCGG-----GCUCaCCCUGCUCGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.