miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3966 3' -54.7 NC_001650.1 + 180576 0.66 0.961611
Target:  5'- ----gUGACggGGAcGG-GGGGUCGGCc -3'
miRNA:   3'- cuaagACUGuaCCU-CCaCCUCGGCCG- -5'
3966 3' -54.7 NC_001650.1 + 13869 0.66 0.961611
Target:  5'- ----gUGACggGGAcGG-GGGGUCGGCc -3'
miRNA:   3'- cuaagACUGuaCCU-CCaCCUCGGCCG- -5'
3966 3' -54.7 NC_001650.1 + 107309 0.66 0.95802
Target:  5'- aGGUgCgugGugGUGGGGGUGGAGCa--- -3'
miRNA:   3'- -CUAaGa--CugUACCUCCACCUCGgccg -5'
3966 3' -54.7 NC_001650.1 + 138180 0.66 0.954206
Target:  5'- ---cCUGAgcuCGUGGAGcauGUGGGGCaGGCu -3'
miRNA:   3'- cuaaGACU---GUACCUC---CACCUCGgCCG- -5'
3966 3' -54.7 NC_001650.1 + 107844 0.66 0.950164
Target:  5'- --cUCUGACAaaaagGGGGGcgGGGGCgagggGGCg -3'
miRNA:   3'- cuaAGACUGUa----CCUCCa-CCUCGg----CCG- -5'
3966 3' -54.7 NC_001650.1 + 175449 0.66 0.94589
Target:  5'- gGGggUUGcauGCA-GGGGGUGGAcCCGGCg -3'
miRNA:   3'- -CUaaGAC---UGUaCCUCCACCUcGGCCG- -5'
3966 3' -54.7 NC_001650.1 + 32156 0.66 0.94589
Target:  5'- -----aGACAagaUGGGGGUcgGGGGCgGGCc -3'
miRNA:   3'- cuaagaCUGU---ACCUCCA--CCUCGgCCG- -5'
3966 3' -54.7 NC_001650.1 + 8742 0.66 0.94589
Target:  5'- gGGggUUGcauGCA-GGGGGUGGAcCCGGCg -3'
miRNA:   3'- -CUaaGAC---UGUaCCUCCACCUcGGCCG- -5'
3966 3' -54.7 NC_001650.1 + 28184 0.67 0.936153
Target:  5'- --aUCaGAUagGGAcGGUGGAGCCcaggacgGGCg -3'
miRNA:   3'- cuaAGaCUGuaCCU-CCACCUCGG-------CCG- -5'
3966 3' -54.7 NC_001650.1 + 34743 0.67 0.931659
Target:  5'- -----cGACGUGGAcGUGGAGgCaGGCa -3'
miRNA:   3'- cuaagaCUGUACCUcCACCUCgG-CCG- -5'
3966 3' -54.7 NC_001650.1 + 135574 0.67 0.926439
Target:  5'- aGGUgcgCgaaGCA-GGAGGcGGAGCCGGUu -3'
miRNA:   3'- -CUAa--Gac-UGUaCCUCCaCCUCGGCCG- -5'
3966 3' -54.7 NC_001650.1 + 79144 0.67 0.92098
Target:  5'- ----aUGGCAucUGGGGGUGGuGgCGGUu -3'
miRNA:   3'- cuaagACUGU--ACCUCCACCuCgGCCG- -5'
3966 3' -54.7 NC_001650.1 + 128548 0.67 0.92098
Target:  5'- -----cGuACAUGGGGG-GcGAGCUGGCg -3'
miRNA:   3'- cuaagaC-UGUACCUCCaC-CUCGGCCG- -5'
3966 3' -54.7 NC_001650.1 + 68224 0.68 0.903177
Target:  5'- -----aGGcCGUGGAGGUGGAGUacaauuuuauucUGGCa -3'
miRNA:   3'- cuaagaCU-GUACCUCCACCUCG------------GCCG- -5'
3966 3' -54.7 NC_001650.1 + 19317 0.68 0.896773
Target:  5'- cGGUgg-GGCccgGGGGGUGGGGUggCGGCg -3'
miRNA:   3'- -CUAagaCUGua-CCUCCACCUCG--GCCG- -5'
3966 3' -54.7 NC_001650.1 + 143785 0.68 0.890139
Target:  5'- -----gGACgAUGGGGG-GGGGaCCGGCu -3'
miRNA:   3'- cuaagaCUG-UACCUCCaCCUC-GGCCG- -5'
3966 3' -54.7 NC_001650.1 + 91753 0.69 0.876193
Target:  5'- gGAUUggGugGUGGcuGUGGGGCUGGUu -3'
miRNA:   3'- -CUAAgaCugUACCucCACCUCGGCCG- -5'
3966 3' -54.7 NC_001650.1 + 151309 0.69 0.853656
Target:  5'- uGAggCUGAgGaGGAGGUGGAGgucgaGGCa -3'
miRNA:   3'- -CUaaGACUgUaCCUCCACCUCgg---CCG- -5'
3966 3' -54.7 NC_001650.1 + 56443 0.69 0.853656
Target:  5'- aGGUUCuUGGCcuUGGAGGgGuGGGCCGGg -3'
miRNA:   3'- -CUAAG-ACUGu-ACCUCCaC-CUCGGCCg -5'
3966 3' -54.7 NC_001650.1 + 147639 0.7 0.820835
Target:  5'- gGGUcgCUGGCucGGGGGU-GAGCCGGUg -3'
miRNA:   3'- -CUAa-GACUGuaCCUCCAcCUCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.