miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3966 5' -60.3 NC_001650.1 + 58190 0.66 0.794331
Target:  5'- aGGGUCuucGCCgCCCCGAGCAGaGUCu- -3'
miRNA:   3'- -UCCGGcc-UGG-GGGGCUCGUUaCAGuc -5'
3966 5' -60.3 NC_001650.1 + 134732 0.66 0.794331
Target:  5'- gAGG-CGGACCCCCCaGAuGCugcuGUGgaggCGGc -3'
miRNA:   3'- -UCCgGCCUGGGGGG-CU-CGu---UACa---GUC- -5'
3966 5' -60.3 NC_001650.1 + 179495 0.66 0.785568
Target:  5'- cGGGCacggaGGGCCUCCgGAGCcccAUGgcuggCAGg -3'
miRNA:   3'- -UCCGg----CCUGGGGGgCUCGu--UACa----GUC- -5'
3966 5' -60.3 NC_001650.1 + 12788 0.66 0.785568
Target:  5'- cGGGCacggaGGGCCUCCgGAGCcccAUGgcuggCAGg -3'
miRNA:   3'- -UCCGg----CCUGGGGGgCUCGu--UACa----GUC- -5'
3966 5' -60.3 NC_001650.1 + 134244 0.66 0.782914
Target:  5'- aGGuGCCGGuguCCcaggugaucaggguCCCCGAGU--UGUCAGa -3'
miRNA:   3'- -UC-CGGCCu--GG--------------GGGGCUCGuuACAGUC- -5'
3966 5' -60.3 NC_001650.1 + 34461 0.66 0.767667
Target:  5'- gAGGgCGG-CCCaggagCCGGGCGcgcacccgGUGUCAGa -3'
miRNA:   3'- -UCCgGCCuGGGg----GGCUCGU--------UACAGUC- -5'
3966 5' -60.3 NC_001650.1 + 113693 0.66 0.74932
Target:  5'- uGGGCgGGGCgCUCCUGAGCuucacGUG-CAGc -3'
miRNA:   3'- -UCCGgCCUG-GGGGGCUCGu----UACaGUC- -5'
3966 5' -60.3 NC_001650.1 + 63160 0.66 0.74932
Target:  5'- -cGCCGcGGCgUCCCCGGGCAGggcGUCGu -3'
miRNA:   3'- ucCGGC-CUG-GGGGGCUCGUUa--CAGUc -5'
3966 5' -60.3 NC_001650.1 + 47599 0.66 0.746533
Target:  5'- aGGGCgCcccGACgCCCCCGGGCGGUGggcuggguuugucuUCGGg -3'
miRNA:   3'- -UCCG-Gc--CUG-GGGGGCUCGUUAC--------------AGUC- -5'
3966 5' -60.3 NC_001650.1 + 118372 0.66 0.746533
Target:  5'- cAGGCa-GcucugcacguucuuGCCCCCCGAGCuaaaguugGUCAGg -3'
miRNA:   3'- -UCCGgcC--------------UGGGGGGCUCGuua-----CAGUC- -5'
3966 5' -60.3 NC_001650.1 + 148408 0.66 0.74
Target:  5'- uGGCCGcGCCCCCCuGGCGcgGg--- -3'
miRNA:   3'- uCCGGCcUGGGGGGcUCGUuaCaguc -5'
3966 5' -60.3 NC_001650.1 + 26471 0.66 0.74
Target:  5'- aGGGCCGGacgcGCCCCCCuau--GUGUaCAGg -3'
miRNA:   3'- -UCCGGCC----UGGGGGGcucguUACA-GUC- -5'
3966 5' -60.3 NC_001650.1 + 90184 0.66 0.74
Target:  5'- cGGcGCUGGcGCCCCCUGgcGGCGGUGgggaagCGGg -3'
miRNA:   3'- -UC-CGGCC-UGGGGGGC--UCGUUACa-----GUC- -5'
3966 5' -60.3 NC_001650.1 + 29191 0.67 0.721107
Target:  5'- cGGCCGccuACCaCCCCuGGCAGUGgCAGc -3'
miRNA:   3'- uCCGGCc--UGG-GGGGcUCGUUACaGUC- -5'
3966 5' -60.3 NC_001650.1 + 154315 0.67 0.71155
Target:  5'- cGGGCCGGugC-CCCGAGUA----CAGa -3'
miRNA:   3'- -UCCGGCCugGgGGGCUCGUuacaGUC- -5'
3966 5' -60.3 NC_001650.1 + 27358 0.67 0.71155
Target:  5'- aGGGCUGcGAgaCCCCCGAGCAGaggGUgGa -3'
miRNA:   3'- -UCCGGC-CUg-GGGGGCUCGUUa--CAgUc -5'
3966 5' -60.3 NC_001650.1 + 110669 0.67 0.701931
Target:  5'- -cGCaCGcGCCCCCuCGGGCGAUGcCGGa -3'
miRNA:   3'- ucCG-GCcUGGGGG-GCUCGUUACaGUC- -5'
3966 5' -60.3 NC_001650.1 + 148531 0.67 0.701931
Target:  5'- cGGCCGuGAgCCCCCCGGcCAGgagGUCc- -3'
miRNA:   3'- uCCGGC-CU-GGGGGGCUcGUUa--CAGuc -5'
3966 5' -60.3 NC_001650.1 + 37556 0.67 0.701931
Target:  5'- -cGCCGGGCCCgucgCCCGGGUuaauccccgaAGUGUgGGg -3'
miRNA:   3'- ucCGGCCUGGG----GGGCUCG----------UUACAgUC- -5'
3966 5' -60.3 NC_001650.1 + 55955 0.67 0.701931
Target:  5'- uGGGCCccACCCCCuCGGGCAcgGgcccgUAGg -3'
miRNA:   3'- -UCCGGccUGGGGG-GCUCGUuaCa----GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.