miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
397 3' -55.8 AC_000011.1 + 9218 0.66 0.568256
Target:  5'- uCGCcgAGCUcaUCCGUcuuCUGGAGGAGGAg -3'
miRNA:   3'- -GCG--UCGGcaAGGCGu--GGCUUCCUUCU- -5'
397 3' -55.8 AC_000011.1 + 9891 0.66 0.568256
Target:  5'- gCGCAuGCaCGg-CCGCGCgGGcgAGGAGGAg -3'
miRNA:   3'- -GCGU-CG-GCaaGGCGUGgCU--UCCUUCU- -5'
397 3' -55.8 AC_000011.1 + 23742 0.67 0.52108
Target:  5'- gCGCuGCUcgaCCGCACCGAGgugccccucagcguGGAGGAg -3'
miRNA:   3'- -GCGuCGGcaaGGCGUGGCUU--------------CCUUCU- -5'
397 3' -55.8 AC_000011.1 + 17110 0.67 0.502841
Target:  5'- cCGCGGCgGUacacucUCCGCACC--AGGgcGGc -3'
miRNA:   3'- -GCGUCGgCA------AGGCGUGGcuUCCuuCU- -5'
397 3' -55.8 AC_000011.1 + 18238 0.67 0.48175
Target:  5'- uCGCcGCCG--CCGCuguccACCaGAAGGAGGAg -3'
miRNA:   3'- -GCGuCGGCaaGGCG-----UGG-CUUCCUUCU- -5'
397 3' -55.8 AC_000011.1 + 18070 0.68 0.471366
Target:  5'- gGUGGCCGUggcCCGCGCgCGAcccGGggGc -3'
miRNA:   3'- gCGUCGGCAa--GGCGUG-GCUu--CCuuCu -5'
397 3' -55.8 AC_000011.1 + 17931 0.68 0.450947
Target:  5'- aGCAG-CGUcuccUCCGCAUCGggGcGggGu -3'
miRNA:   3'- gCGUCgGCA----AGGCGUGGCuuC-CuuCu -5'
397 3' -55.8 AC_000011.1 + 25690 0.69 0.411624
Target:  5'- aGCAGCCG--CCGCcagACCGucguccucggcGGGGGAGAa -3'
miRNA:   3'- gCGUCGGCaaGGCG---UGGC-----------UUCCUUCU- -5'
397 3' -55.8 AC_000011.1 + 16562 0.69 0.392775
Target:  5'- cCGCGGCg---CCGCGCCGggGGuucaagcgcGAGGg -3'
miRNA:   3'- -GCGUCGgcaaGGCGUGGCuuCC---------UUCU- -5'
397 3' -55.8 AC_000011.1 + 30614 0.69 0.392775
Target:  5'- gGCAGCCGgagCCGCuucaggUgGAAGGggGu -3'
miRNA:   3'- gCGUCGGCaa-GGCGu-----GgCUUCCuuCu -5'
397 3' -55.8 AC_000011.1 + 14793 0.69 0.392775
Target:  5'- uGCAGCCGUagcuaCCGCcucuACCGAGGucAGGg -3'
miRNA:   3'- gCGUCGGCAa----GGCG----UGGCUUCcuUCU- -5'
397 3' -55.8 AC_000011.1 + 13396 0.69 0.374496
Target:  5'- uCGCGGCCGgacaGCGCCG-AGGAcGGg -3'
miRNA:   3'- -GCGUCGGCaaggCGUGGCuUCCUuCU- -5'
397 3' -55.8 AC_000011.1 + 5163 0.7 0.365575
Target:  5'- cCGCAGCCGUcccaacCCGCGaaaCG-AGGAGGu -3'
miRNA:   3'- -GCGUCGGCAa-----GGCGUg--GCuUCCUUCu -5'
397 3' -55.8 AC_000011.1 + 4855 0.7 0.356802
Target:  5'- aGCuGCCG-UCCuC-CCGGAGGAGGGg -3'
miRNA:   3'- gCGuCGGCaAGGcGuGGCUUCCUUCU- -5'
397 3' -55.8 AC_000011.1 + 17505 0.71 0.299596
Target:  5'- aCGCGGCCGUUCauggGCACCuGGAGcGAc-- -3'
miRNA:   3'- -GCGUCGGCAAGg---CGUGG-CUUC-CUucu -5'
397 3' -55.8 AC_000011.1 + 22961 0.76 0.140129
Target:  5'- cCGCuuGCCGUccuucucggugaUCCGCACCGggGGGu-- -3'
miRNA:   3'- -GCGu-CGGCA------------AGGCGUGGCuuCCUucu -5'
397 3' -55.8 AC_000011.1 + 16458 1.09 0.000521
Target:  5'- gCGCAGCCGUUCCGCACCGAAGGAAGAg -3'
miRNA:   3'- -GCGUCGGCAAGGCGUGGCUUCCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.