miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
397 5' -60.1 AC_000011.1 + 21888 0.66 0.365832
Target:  5'- --gCCCGC-GGGCCAugccgagaccCGGCAgaACCCUu -3'
miRNA:   3'- guaGGGCGaCCUGGU----------GCCGU--UGGGGu -5'
397 5' -60.1 AC_000011.1 + 11180 0.66 0.357247
Target:  5'- --cCCCGCguggaaccGGGCCGCGcGCAucuCCUCGg -3'
miRNA:   3'- guaGGGCGa-------CCUGGUGC-CGUu--GGGGU- -5'
397 5' -60.1 AC_000011.1 + 9392 0.66 0.356397
Target:  5'- cCGUCCuCGCgGGGCCGCaGCGugaagacGCCgCCGc -3'
miRNA:   3'- -GUAGG-GCGaCCUGGUGcCGU-------UGG-GGU- -5'
397 5' -60.1 AC_000011.1 + 13956 0.66 0.335596
Target:  5'- --cCCCGCUGGAggcuccuacgugcccCCGCGGUAccugGCgCCUAc -3'
miRNA:   3'- guaGGGCGACCU---------------GGUGCCGU----UG-GGGU- -5'
397 5' -60.1 AC_000011.1 + 18601 0.66 0.332351
Target:  5'- aCAUCCgcggcgUGCUGGAUCGgGGCccuagcuucaAACCCUAc -3'
miRNA:   3'- -GUAGG------GCGACCUGGUgCCG----------UUGGGGU- -5'
397 5' -60.1 AC_000011.1 + 18129 0.67 0.293742
Target:  5'- gGUCgCGCgcGGGCCACGGCcACCg-- -3'
miRNA:   3'- gUAGgGCGa-CCUGGUGCCGuUGGggu -5'
397 5' -60.1 AC_000011.1 + 7580 0.68 0.265443
Target:  5'- -cUCCCGaCUGGGCgcucgagcagCACGggcucaGCGACCCCGa -3'
miRNA:   3'- guAGGGC-GACCUG----------GUGC------CGUUGGGGU- -5'
397 5' -60.1 AC_000011.1 + 10815 0.68 0.265443
Target:  5'- gCAUCCCGU---ACUGCGGCAgaugcGCCCCc -3'
miRNA:   3'- -GUAGGGCGaccUGGUGCCGU-----UGGGGu -5'
397 5' -60.1 AC_000011.1 + 17316 0.69 0.233224
Target:  5'- uCAUCgCCGCgGcGAUCGgGGCGAuCCCCGg -3'
miRNA:   3'- -GUAG-GGCGaC-CUGGUgCCGUU-GGGGU- -5'
397 5' -60.1 AC_000011.1 + 12438 0.69 0.233224
Target:  5'- -cUCgCGCUGGGCCACGGCcuCgCgCAc -3'
miRNA:   3'- guAGgGCGACCUGGUGCCGuuGgG-GU- -5'
397 5' -60.1 AC_000011.1 + 14651 0.69 0.232007
Target:  5'- --aCCUGCUGGGCauucgcaagaGGCAGCCCUu -3'
miRNA:   3'- guaGGGCGACCUGgug-------CCGUUGGGGu -5'
397 5' -60.1 AC_000011.1 + 15572 0.69 0.221286
Target:  5'- aCAUCuuGCUGG--CGCGcGCAgGCCCCAa -3'
miRNA:   3'- -GUAGggCGACCugGUGC-CGU-UGGGGU- -5'
397 5' -60.1 AC_000011.1 + 20303 0.69 0.215515
Target:  5'- --cCUCGCUGGGCUcCGGguuCGACCCCu -3'
miRNA:   3'- guaGGGCGACCUGGuGCC---GUUGGGGu -5'
397 5' -60.1 AC_000011.1 + 11377 0.7 0.198971
Target:  5'- --aCCUGCUGGagGCCAuCGuGCAgaACCCCAc -3'
miRNA:   3'- guaGGGCGACC--UGGU-GC-CGU--UGGGGU- -5'
397 5' -60.1 AC_000011.1 + 22524 0.7 0.173855
Target:  5'- -cUCCUuCUGGAUCAUGGUggUCCCGu -3'
miRNA:   3'- guAGGGcGACCUGGUGCCGuuGGGGU- -5'
397 5' -60.1 AC_000011.1 + 22303 0.73 0.119316
Target:  5'- --gCCUGCUGGGCCuuGGCucccucggugaagaaGACCCCGc -3'
miRNA:   3'- guaGGGCGACCUGGugCCG---------------UUGGGGU- -5'
397 5' -60.1 AC_000011.1 + 14966 0.73 0.108103
Target:  5'- --aCCgCGCUGGuaccuagccuacaACUAUGGCGACCCCGa -3'
miRNA:   3'- guaGG-GCGACC-------------UGGUGCCGUUGGGGU- -5'
397 5' -60.1 AC_000011.1 + 16493 1.07 0.000246
Target:  5'- cCAUCCCGCUGGACCACGGCAACCCCAc -3'
miRNA:   3'- -GUAGGGCGACCUGGUGCCGUUGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.