miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3978 3' -63.3 NC_001650.1 + 100723 0.67 0.614289
Target:  5'- gCCuuGGaGAGGGAGgggUGGUGCCgGGGg -3'
miRNA:   3'- -GGcgCCgCUCCCUCg--ACCACGGgCUC- -5'
3978 3' -63.3 NC_001650.1 + 110897 0.67 0.604747
Target:  5'- gCCGCGGCGAcuggauggGGGGGCgagcagGCCCcGGc -3'
miRNA:   3'- -GGCGCCGCU--------CCCUCGacca--CGGGcUC- -5'
3978 3' -63.3 NC_001650.1 + 82864 0.67 0.604747
Target:  5'- cCCGCgaGGUGGGGaccAGgaGGUGCCUGGa -3'
miRNA:   3'- -GGCG--CCGCUCCc--UCgaCCACGGGCUc -5'
3978 3' -63.3 NC_001650.1 + 159237 0.67 0.596174
Target:  5'- aCUcCGGgGAGGGGGCcccgaaccccaggugGGUGCCCuGGGc -3'
miRNA:   3'- -GGcGCCgCUCCCUCGa--------------CCACGGG-CUC- -5'
3978 3' -63.3 NC_001650.1 + 82285 0.67 0.595223
Target:  5'- gCUGCugGGCGGccagaaaguacuGGGcGCUGGUGCCCu-- -3'
miRNA:   3'- -GGCG--CCGCU------------CCCuCGACCACGGGcuc -5'
3978 3' -63.3 NC_001650.1 + 20679 0.67 0.595223
Target:  5'- aCGgGGgGgacGGGGGGuCUGGUGCCgGGc -3'
miRNA:   3'- gGCgCCgC---UCCCUC-GACCACGGgCUc -5'
3978 3' -63.3 NC_001650.1 + 57811 0.67 0.595223
Target:  5'- -aGCGGCGGGGGcGCgaagGGcaucGCuCCGGGc -3'
miRNA:   3'- ggCGCCGCUCCCuCGa---CCa---CG-GGCUC- -5'
3978 3' -63.3 NC_001650.1 + 102586 0.67 0.585723
Target:  5'- aCGUGaCGGGGGAGCUGGcccGCgCGGc -3'
miRNA:   3'- gGCGCcGCUCCCUCGACCa--CGgGCUc -5'
3978 3' -63.3 NC_001650.1 + 66896 0.67 0.585723
Target:  5'- gCCgGgGGCcGGGGAGCaUGGgGCCgGGGa -3'
miRNA:   3'- -GG-CgCCGcUCCCUCG-ACCaCGGgCUC- -5'
3978 3' -63.3 NC_001650.1 + 81039 0.67 0.585723
Target:  5'- aCGUGGCGcacaucAGGGuGCUGGgccGCCUGu- -3'
miRNA:   3'- gGCGCCGC------UCCCuCGACCa--CGGGCuc -5'
3978 3' -63.3 NC_001650.1 + 114754 0.67 0.576252
Target:  5'- aCGCGcGCGAGgaauGGGGUgccGG-GCCCGGGc -3'
miRNA:   3'- gGCGC-CGCUC----CCUCGa--CCaCGGGCUC- -5'
3978 3' -63.3 NC_001650.1 + 175887 0.67 0.576252
Target:  5'- cCCGgGGUGGuGGGGGCUaugggGGUGUgUGGGu -3'
miRNA:   3'- -GGCgCCGCU-CCCUCGA-----CCACGgGCUC- -5'
3978 3' -63.3 NC_001650.1 + 9180 0.67 0.576252
Target:  5'- cCCGgGGUGGuGGGGGCUaugggGGUGUgUGGGu -3'
miRNA:   3'- -GGCgCCGCU-CCCUCGA-----CCACGgGCUC- -5'
3978 3' -63.3 NC_001650.1 + 72721 0.67 0.575307
Target:  5'- gCGCGGCGGcGGGgaucaccAGCccgggGGUGgCCUGGGg -3'
miRNA:   3'- gGCGCCGCU-CCC-------UCGa----CCAC-GGGCUC- -5'
3978 3' -63.3 NC_001650.1 + 26923 0.67 0.566815
Target:  5'- gCGagGGCGGGGGcgGGgaGGUGCCCc-- -3'
miRNA:   3'- gGCg-CCGCUCCC--UCgaCCACGGGcuc -5'
3978 3' -63.3 NC_001650.1 + 141268 0.67 0.566815
Target:  5'- cCCGCGGCG-GcGAGCgGGcGCgCGGGg -3'
miRNA:   3'- -GGCGCCGCuCcCUCGaCCaCGgGCUC- -5'
3978 3' -63.3 NC_001650.1 + 50006 0.67 0.566815
Target:  5'- cCCGUGGagcaaGAGGaaGAGgaGGagGCCCGGGc -3'
miRNA:   3'- -GGCGCCg----CUCC--CUCgaCCa-CGGGCUC- -5'
3978 3' -63.3 NC_001650.1 + 89155 0.67 0.566815
Target:  5'- cCCGCcuGGCGgacAGGGucCU-GUGCCCGGGg -3'
miRNA:   3'- -GGCG--CCGC---UCCCucGAcCACGGGCUC- -5'
3978 3' -63.3 NC_001650.1 + 121594 0.67 0.566815
Target:  5'- -gGCGGCgGAGGGcAGCgcccucgGGUGgCCCGu- -3'
miRNA:   3'- ggCGCCG-CUCCC-UCGa------CCAC-GGGCuc -5'
3978 3' -63.3 NC_001650.1 + 48590 0.68 0.555545
Target:  5'- aCCGCGGUGGGGacggcgcGGGCgccaggcuagcugUGGUGUgcgCCGAGu -3'
miRNA:   3'- -GGCGCCGCUCC-------CUCG-------------ACCACG---GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.