miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3978 5' -56.6 NC_001650.1 + 122937 0.66 0.89365
Target:  5'- cG-CCCACGGGgUCCUgGCgGACcUCg -3'
miRNA:   3'- aCgGGGUGCUCgAGGAgUGgUUGuAG- -5'
3978 5' -56.6 NC_001650.1 + 59519 0.66 0.886952
Target:  5'- cUGCCCuCGCGca-UCCUCAUgAGCAUa -3'
miRNA:   3'- -ACGGG-GUGCucgAGGAGUGgUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 98505 0.66 0.886952
Target:  5'- cGCCUCGCGAuguGCUCCUUuugaaACUGGC-UCa -3'
miRNA:   3'- aCGGGGUGCU---CGAGGAG-----UGGUUGuAG- -5'
3978 5' -56.6 NC_001650.1 + 62656 0.66 0.886952
Target:  5'- aGCCCCugGGGCaUCCcacguucgugCACCggUAc- -3'
miRNA:   3'- aCGGGGugCUCG-AGGa---------GUGGuuGUag -5'
3978 5' -56.6 NC_001650.1 + 111251 0.66 0.885585
Target:  5'- cUGCCCCA-GGGCcagaaucuggggCCUCGCCcGCAg- -3'
miRNA:   3'- -ACGGGGUgCUCGa-----------GGAGUGGuUGUag -5'
3978 5' -56.6 NC_001650.1 + 121576 0.66 0.880031
Target:  5'- aUGCCCCAggggcucggggcUGGGCUCC-CGCCugUGUUu -3'
miRNA:   3'- -ACGGGGU------------GCUCGAGGaGUGGuuGUAG- -5'
3978 5' -56.6 NC_001650.1 + 73582 0.66 0.880031
Target:  5'- aGCCCCAgGGGCagggCCUCgugCGugGUCu -3'
miRNA:   3'- aCGGGGUgCUCGa---GGAGug-GUugUAG- -5'
3978 5' -56.6 NC_001650.1 + 128683 0.66 0.880031
Target:  5'- cGCaggCCAcCGAGCgcaUCCUgGCCGACGUg -3'
miRNA:   3'- aCGg--GGU-GCUCG---AGGAgUGGUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 127710 0.66 0.880031
Target:  5'- cGCCCUgcacaccauagACaAGCUCaUCACCAacACAUCa -3'
miRNA:   3'- aCGGGG-----------UGcUCGAGgAGUGGU--UGUAG- -5'
3978 5' -56.6 NC_001650.1 + 100977 0.66 0.880031
Target:  5'- ---aCCACGAGUgCCUCAUCAACGc- -3'
miRNA:   3'- acggGGUGCUCGaGGAGUGGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 140267 0.67 0.872893
Target:  5'- cGgCCCGgGAGCUCC--ACCGGCGg- -3'
miRNA:   3'- aCgGGGUgCUCGAGGagUGGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 134497 0.67 0.872893
Target:  5'- cGCCCUccuaGAGCUCaUCuCCAACAUa -3'
miRNA:   3'- aCGGGGug--CUCGAGgAGuGGUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 170291 0.67 0.872893
Target:  5'- aGCCCCucugucaugGCG-GCcCCUCAUUAACAUg -3'
miRNA:   3'- aCGGGG---------UGCuCGaGGAGUGGUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 3584 0.67 0.872893
Target:  5'- aGCCCCucugucaugGCG-GCcCCUCAUUAACAUg -3'
miRNA:   3'- aCGGGG---------UGCuCGaGGAGUGGUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 95282 0.67 0.872893
Target:  5'- gGCCCUcgaagucgcGCGuGgUCCUgGCCAGCAg- -3'
miRNA:   3'- aCGGGG---------UGCuCgAGGAgUGGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 130033 0.67 0.872893
Target:  5'- cGgCCCGgGAGCUCC--ACCGGCGa- -3'
miRNA:   3'- aCgGGGUgCUCGAGGagUGGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 134775 0.67 0.865542
Target:  5'- aUGCCCCAgaGGCagaCCUCACgGACGa- -3'
miRNA:   3'- -ACGGGGUgcUCGa--GGAGUGgUUGUag -5'
3978 5' -56.6 NC_001650.1 + 95959 0.67 0.865542
Target:  5'- gGCCCCG-GAGCUCC-CGCucccaCAGgAUCg -3'
miRNA:   3'- aCGGGGUgCUCGAGGaGUG-----GUUgUAG- -5'
3978 5' -56.6 NC_001650.1 + 66164 0.67 0.857983
Target:  5'- gUGCgCCACGGGCUguaCUCGuCCAGCc-- -3'
miRNA:   3'- -ACGgGGUGCUCGAg--GAGU-GGUUGuag -5'
3978 5' -56.6 NC_001650.1 + 47080 0.67 0.857983
Target:  5'- -uCCUCGCGGGCgccCCUCGCCAGa--- -3'
miRNA:   3'- acGGGGUGCUCGa--GGAGUGGUUguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.