miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3983 3' -53.5 NC_001650.1 + 148014 0.65 0.981271
Target:  5'- gGGgUCCCGUGGgaccauuugaaaaagGGCGcgGuGGAGCg -3'
miRNA:   3'- -CUgAGGGCACCaa-------------CCGCuaC-CUUUGa -5'
3983 3' -53.5 NC_001650.1 + 67395 0.65 0.981061
Target:  5'- uGACUCUggggacggCGUGGguggcuauaagggUGGCGAUGaGGAGCc -3'
miRNA:   3'- -CUGAGG--------GCACCa------------ACCGCUAC-CUUUGa -5'
3983 3' -53.5 NC_001650.1 + 52371 0.66 0.979767
Target:  5'- uGGCUgCCCG-GGgaGGCGAgcgUGGGAAa- -3'
miRNA:   3'- -CUGA-GGGCaCCaaCCGCU---ACCUUUga -5'
3983 3' -53.5 NC_001650.1 + 56830 0.66 0.974975
Target:  5'- gGGCUCUCG-GGgcuccUGGCGGgcucGGGGACg -3'
miRNA:   3'- -CUGAGGGCaCCa----ACCGCUa---CCUUUGa -5'
3983 3' -53.5 NC_001650.1 + 145639 0.68 0.943074
Target:  5'- cGugUCCCGUGGgUGGUGA---AAGCg -3'
miRNA:   3'- -CugAGGGCACCaACCGCUaccUUUGa -5'
3983 3' -53.5 NC_001650.1 + 123089 0.68 0.938384
Target:  5'- gGGgaCCCGgGGgcGGCGggGGAGGCg -3'
miRNA:   3'- -CUgaGGGCaCCaaCCGCuaCCUUUGa -5'
3983 3' -53.5 NC_001650.1 + 59602 0.69 0.911307
Target:  5'- -uCUCuuGUGGUcGGaaGGUGGAAACUg -3'
miRNA:   3'- cuGAGggCACCAaCCg-CUACCUUUGA- -5'
3983 3' -53.5 NC_001650.1 + 131672 0.69 0.892179
Target:  5'- -cCUCCCugaGGggGGCGGUGGAGguGCUc -3'
miRNA:   3'- cuGAGGGca-CCaaCCGCUACCUU--UGA- -5'
3983 3' -53.5 NC_001650.1 + 163221 0.7 0.855743
Target:  5'- ---gCCagaGUGGUUGGCGGUGGAu--- -3'
miRNA:   3'- cugaGGg--CACCAACCGCUACCUuuga -5'
3983 3' -53.5 NC_001650.1 + 147766 0.72 0.768483
Target:  5'- gGGgaCCCGUGGagGGCGAccgGGGAACa -3'
miRNA:   3'- -CUgaGGGCACCaaCCGCUa--CCUUUGa -5'
3983 3' -53.5 NC_001650.1 + 124580 1.07 0.007521
Target:  5'- aGACUCCCGUGGUUGGCGAUGGAAACUc -3'
miRNA:   3'- -CUGAGGGCACCAACCGCUACCUUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.