miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3983 5' -50.5 NC_001650.1 + 128405 0.66 0.997915
Target:  5'- cGCGGggcacauggacaCCACCUaucugcCCGACCugGAGAc -3'
miRNA:   3'- -UGUCaaa---------GGUGGAa-----GGCUGGugUUCU- -5'
3983 5' -50.5 NC_001650.1 + 133128 0.66 0.997763
Target:  5'- -uGGUUUCuCGCCUggCCGAgCGCGGcGAg -3'
miRNA:   3'- ugUCAAAG-GUGGAa-GGCUgGUGUU-CU- -5'
3983 5' -50.5 NC_001650.1 + 48336 0.66 0.99686
Target:  5'- gGCAGaggcCCcCCUcUCCGACCACGAc- -3'
miRNA:   3'- -UGUCaaa-GGuGGA-AGGCUGGUGUUcu -5'
3983 5' -50.5 NC_001650.1 + 100037 0.66 0.996306
Target:  5'- uCAGUUUCCACCUcagCCaGuCCACcAGc -3'
miRNA:   3'- uGUCAAAGGUGGAa--GG-CuGGUGuUCu -5'
3983 5' -50.5 NC_001650.1 + 64252 0.67 0.99488
Target:  5'- -gAGUUUCUggugcacgcaaagACCUUCCacCCGCAGGAg -3'
miRNA:   3'- ugUCAAAGG-------------UGGAAGGcuGGUGUUCU- -5'
3983 5' -50.5 NC_001650.1 + 165496 0.67 0.994146
Target:  5'- gGCGGUgagcuucugCCACCUUCUGugggaaaguuGCCuCAAGAg -3'
miRNA:   3'- -UGUCAaa-------GGUGGAAGGC----------UGGuGUUCU- -5'
3983 5' -50.5 NC_001650.1 + 26060 0.67 0.994146
Target:  5'- uACAGcggCgGCCUgagcgCCGGCCugAGGGa -3'
miRNA:   3'- -UGUCaaaGgUGGAa----GGCUGGugUUCU- -5'
3983 5' -50.5 NC_001650.1 + 94373 0.67 0.99221
Target:  5'- ------aCCGCCUcUCCGGgCACGAGAg -3'
miRNA:   3'- ugucaaaGGUGGA-AGGCUgGUGUUCU- -5'
3983 5' -50.5 NC_001650.1 + 39057 0.67 0.991068
Target:  5'- uUAGga-CCACCUUCCGcccagucaGCUACGGGGg -3'
miRNA:   3'- uGUCaaaGGUGGAAGGC--------UGGUGUUCU- -5'
3983 5' -50.5 NC_001650.1 + 38123 0.68 0.985126
Target:  5'- uGCGGggccagUUCCcCCUgCUGACCACcAAGAg -3'
miRNA:   3'- -UGUCa-----AAGGuGGAaGGCUGGUG-UUCU- -5'
3983 5' -50.5 NC_001650.1 + 67757 0.68 0.983253
Target:  5'- uUAGUUUCCugUUUCUGugaGCCACcgAAGAg -3'
miRNA:   3'- uGUCAAAGGugGAAGGC---UGGUG--UUCU- -5'
3983 5' -50.5 NC_001650.1 + 43812 0.69 0.981207
Target:  5'- gACAGUga-UGCCUUauGGCCACAAGGu -3'
miRNA:   3'- -UGUCAaagGUGGAAggCUGGUGUUCU- -5'
3983 5' -50.5 NC_001650.1 + 52396 0.69 0.981207
Target:  5'- gGCGGccggCCACCgccCCGGCCugaACAGGAa -3'
miRNA:   3'- -UGUCaaa-GGUGGaa-GGCUGG---UGUUCU- -5'
3983 5' -50.5 NC_001650.1 + 163191 0.69 0.973945
Target:  5'- gGCGGUgUCUAcCCUUUCaGCCACGGGGg -3'
miRNA:   3'- -UGUCAaAGGU-GGAAGGcUGGUGUUCU- -5'
3983 5' -50.5 NC_001650.1 + 59638 0.7 0.968089
Target:  5'- -gAGUUUCCAUCg-CCaACCACGGGAg -3'
miRNA:   3'- ugUCAAAGGUGGaaGGcUGGUGUUCU- -5'
3983 5' -50.5 NC_001650.1 + 160468 0.7 0.968089
Target:  5'- gGCGGgucUCCGCCccCCGcgcGCCGCGAGGa -3'
miRNA:   3'- -UGUCaa-AGGUGGaaGGC---UGGUGUUCU- -5'
3983 5' -50.5 NC_001650.1 + 140399 0.7 0.957643
Target:  5'- -uGGgcgCCACCUUgUGGCCAUAAGGc -3'
miRNA:   3'- ugUCaaaGGUGGAAgGCUGGUGUUCU- -5'
3983 5' -50.5 NC_001650.1 + 85240 0.71 0.945072
Target:  5'- cCAGgcugCCACCUUCCuGACCugGAu- -3'
miRNA:   3'- uGUCaaa-GGUGGAAGG-CUGGugUUcu -5'
3983 5' -50.5 NC_001650.1 + 124836 0.72 0.924838
Target:  5'- aACAGUUUUCAaacUCCGACCACAc-- -3'
miRNA:   3'- -UGUCAAAGGUggaAGGCUGGUGUucu -5'
3983 5' -50.5 NC_001650.1 + 67571 0.72 0.91915
Target:  5'- aGCAGUUucUCUACuCUUgCGACCACAuGGg -3'
miRNA:   3'- -UGUCAA--AGGUG-GAAgGCUGGUGUuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.