miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3986 3' -47.6 NC_001650.1 + 50258 0.66 0.999915
Target:  5'- uCACUUUUAUGCuccGCGGGcacuGCGGCCg -3'
miRNA:   3'- -GUGAGAGUACG---UGUUUacauCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 159852 0.66 0.999915
Target:  5'- -cCUCUcCAUGCGCAccgaGUGG-GACCu -3'
miRNA:   3'- guGAGA-GUACGUGUuua-CAUCgCUGG- -5'
3986 3' -47.6 NC_001650.1 + 142459 0.66 0.999915
Target:  5'- gCACUUUCucauaaagagGUGCuuCAGGcccGUGGCGGCCu -3'
miRNA:   3'- -GUGAGAG----------UACGu-GUUUa--CAUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 119112 0.66 0.999889
Target:  5'- gACgggCAUGCcCAGAUGc-GCGGCCg -3'
miRNA:   3'- gUGagaGUACGuGUUUACauCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 31332 0.66 0.999889
Target:  5'- uGCUCUCugacGCGCGGGUcaGgcGgGACCu -3'
miRNA:   3'- gUGAGAGua--CGUGUUUA--CauCgCUGG- -5'
3986 3' -47.6 NC_001650.1 + 11617 0.66 0.999889
Target:  5'- -cCUCUUAacUGCGCAAGcggGUGG-GACCc -3'
miRNA:   3'- guGAGAGU--ACGUGUUUa--CAUCgCUGG- -5'
3986 3' -47.6 NC_001650.1 + 178324 0.66 0.999889
Target:  5'- -cCUCUUAacUGCGCAAGcggGUGG-GACCc -3'
miRNA:   3'- guGAGAGU--ACGUGUUUa--CAUCgCUGG- -5'
3986 3' -47.6 NC_001650.1 + 29042 0.67 0.999762
Target:  5'- aCGCcCUCGggGCGCGGGg--GGUGGCCg -3'
miRNA:   3'- -GUGaGAGUa-CGUGUUUacaUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 56095 0.67 0.999697
Target:  5'- aCGCUCUCGcccuugGUGCAgauGAUGUAcGCGuCCu -3'
miRNA:   3'- -GUGAGAGUa-----CGUGU---UUACAU-CGCuGG- -5'
3986 3' -47.6 NC_001650.1 + 125093 0.67 0.999618
Target:  5'- cCGCucgUCUCAaGCACAgcagGcgGUcAGCGGCCc -3'
miRNA:   3'- -GUG---AGAGUaCGUGU----UuaCA-UCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 60764 0.67 0.999618
Target:  5'- gCACUg-CAUGCcCGc--GUAGCGGCCg -3'
miRNA:   3'- -GUGAgaGUACGuGUuuaCAUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 89849 0.67 0.999609
Target:  5'- -cCUCUCGUGCccggagaggcgguGCGGGUcGUGGCGAg- -3'
miRNA:   3'- guGAGAGUACG-------------UGUUUA-CAUCGCUgg -5'
3986 3' -47.6 NC_001650.1 + 153246 0.67 0.99952
Target:  5'- gCGC-CUCGUGCGCAAAc--AGCuuGGCCa -3'
miRNA:   3'- -GUGaGAGUACGUGUUUacaUCG--CUGG- -5'
3986 3' -47.6 NC_001650.1 + 109676 0.67 0.999402
Target:  5'- gACUCUaggGC-CAcg-GUGGCGGCCu -3'
miRNA:   3'- gUGAGAguaCGuGUuuaCAUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 111358 0.68 0.999259
Target:  5'- cCGCgaUCAUGgGCugcaggGUGGCGGCCa -3'
miRNA:   3'- -GUGagAGUACgUGuuua--CAUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 111518 0.68 0.999088
Target:  5'- -cCUCUCGUGg------GUGGCGACCg -3'
miRNA:   3'- guGAGAGUACguguuuaCAUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 183784 0.68 0.99907
Target:  5'- -cCUCUUAUGCACAGggGcuucccaccaagaUGGCuGACCc -3'
miRNA:   3'- guGAGAGUACGUGUUuaC-------------AUCG-CUGG- -5'
3986 3' -47.6 NC_001650.1 + 17077 0.68 0.99907
Target:  5'- -cCUCUUAUGCACAGggGcuucccaccaagaUGGCuGACCc -3'
miRNA:   3'- guGAGAGUACGUGUUuaC-------------AUCG-CUGG- -5'
3986 3' -47.6 NC_001650.1 + 53492 0.68 0.998885
Target:  5'- --aUCUCAUGC-CGGuUG-GGCGGCCu -3'
miRNA:   3'- gugAGAGUACGuGUUuACaUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 36304 0.68 0.998643
Target:  5'- aGCUCagcgggcuUCAUGCGCGcGGUGUccaaggucaaGGUGGCCg -3'
miRNA:   3'- gUGAG--------AGUACGUGU-UUACA----------UCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.