miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3986 3' -47.6 NC_001650.1 + 125371 1.14 0.010869
Target:  5'- gCACUCUCAUGCACAAAUGUAGCGACCg -3'
miRNA:   3'- -GUGAGAGUACGUGUUUACAUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 3224 0.78 0.820948
Target:  5'- gGCUCUUAgggaGCACGugggacUGUGGCGGCCa -3'
miRNA:   3'- gUGAGAGUa---CGUGUuu----ACAUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 169931 0.78 0.820948
Target:  5'- gGCUCUUAgggaGCACGugggacUGUGGCGGCCa -3'
miRNA:   3'- gUGAGAGUa---CGUGUuu----ACAUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 16660 0.72 0.981338
Target:  5'- -uCUCUCAUGCACAGggGgcucccuaccaauaUGGCuGACCc -3'
miRNA:   3'- guGAGAGUACGUGUUuaC--------------AUCG-CUGG- -5'
3986 3' -47.6 NC_001650.1 + 183367 0.72 0.981338
Target:  5'- -uCUCUCAUGCACAGggGgcucccuaccaauaUGGCuGACCc -3'
miRNA:   3'- guGAGAGUACGUGUUuaC--------------AUCG-CUGG- -5'
3986 3' -47.6 NC_001650.1 + 113488 0.71 0.987532
Target:  5'- aCugUCUCGuUGCACAcc-GUGGCcGCCa -3'
miRNA:   3'- -GugAGAGU-ACGUGUuuaCAUCGcUGG- -5'
3986 3' -47.6 NC_001650.1 + 76735 0.71 0.991659
Target:  5'- uGCgCUCGUGCAgCAGG-GUGGCGAUg -3'
miRNA:   3'- gUGaGAGUACGU-GUUUaCAUCGCUGg -5'
3986 3' -47.6 NC_001650.1 + 29977 0.7 0.993655
Target:  5'- aGCUCgcggcCGUguacGCGCAGGUGUuugaccuGGCGGCCg -3'
miRNA:   3'- gUGAGa----GUA----CGUGUUUACA-------UCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 1558 0.7 0.995395
Target:  5'- gACUCUCAccuagagGC-CAGGUGUAGCuauggggcguGGCCa -3'
miRNA:   3'- gUGAGAGUa------CGuGUUUACAUCG----------CUGG- -5'
3986 3' -47.6 NC_001650.1 + 168265 0.7 0.995395
Target:  5'- gACUCUCAccuagagGC-CAGGUGUAGCuauggggcguGGCCa -3'
miRNA:   3'- gUGAGAGUa------CGuGUUUACAUCG----------CUGG- -5'
3986 3' -47.6 NC_001650.1 + 107076 0.69 0.998026
Target:  5'- cCACcgagCUCAUGgGCGAcgGggccgccGCGACCa -3'
miRNA:   3'- -GUGa---GAGUACgUGUUuaCau-----CGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 62826 0.68 0.998359
Target:  5'- -uCUCUgAUGCACAuaaggAGCGACg -3'
miRNA:   3'- guGAGAgUACGUGUuuacaUCGCUGg -5'
3986 3' -47.6 NC_001650.1 + 36304 0.68 0.998643
Target:  5'- aGCUCagcgggcuUCAUGCGCGcGGUGUccaaggucaaGGUGGCCg -3'
miRNA:   3'- gUGAG--------AGUACGUGU-UUACA----------UCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 53492 0.68 0.998885
Target:  5'- --aUCUCAUGC-CGGuUG-GGCGGCCu -3'
miRNA:   3'- gugAGAGUACGuGUUuACaUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 17077 0.68 0.99907
Target:  5'- -cCUCUUAUGCACAGggGcuucccaccaagaUGGCuGACCc -3'
miRNA:   3'- guGAGAGUACGUGUUuaC-------------AUCG-CUGG- -5'
3986 3' -47.6 NC_001650.1 + 183784 0.68 0.99907
Target:  5'- -cCUCUUAUGCACAGggGcuucccaccaagaUGGCuGACCc -3'
miRNA:   3'- guGAGAGUACGUGUUuaC-------------AUCG-CUGG- -5'
3986 3' -47.6 NC_001650.1 + 111518 0.68 0.999088
Target:  5'- -cCUCUCGUGg------GUGGCGACCg -3'
miRNA:   3'- guGAGAGUACguguuuaCAUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 111358 0.68 0.999259
Target:  5'- cCGCgaUCAUGgGCugcaggGUGGCGGCCa -3'
miRNA:   3'- -GUGagAGUACgUGuuua--CAUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 109676 0.67 0.999402
Target:  5'- gACUCUaggGC-CAcg-GUGGCGGCCu -3'
miRNA:   3'- gUGAGAguaCGuGUuuaCAUCGCUGG- -5'
3986 3' -47.6 NC_001650.1 + 153246 0.67 0.99952
Target:  5'- gCGC-CUCGUGCGCAAAc--AGCuuGGCCa -3'
miRNA:   3'- -GUGaGAGUACGUGUUUacaUCG--CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.