Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3986 | 5' | -51.9 | NC_001650.1 | + | 35587 | 0.66 | 0.994828 |
Target: 5'- cGGGGUCcg-GCGCGUGcgaGCGCcuGGGg -3' miRNA: 3'- -UCUCAGcuaUGUGCGCa--CGUGuuCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 122130 | 0.66 | 0.994017 |
Target: 5'- cGGGGUCGGcucggGgGCGgGggcgGCGgGAGGGg -3' miRNA: 3'- -UCUCAGCUa----UgUGCgCa---CGUgUUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 60685 | 0.66 | 0.994017 |
Target: 5'- gAGaAGUCGGUguuGCugGCGUcGCGCuucAGGu -3' miRNA: 3'- -UC-UCAGCUA---UGugCGCA-CGUGu--UCCc -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 38034 | 0.66 | 0.99301 |
Target: 5'- cAGGGa-GAUcCugGCGaacggggUGCGCAGGGGg -3' miRNA: 3'- -UCUCagCUAuGugCGC-------ACGUGUUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 49543 | 0.66 | 0.992089 |
Target: 5'- -cGGUCGugggcgACACGCagcccgagaugGUGCACGGGGu -3' miRNA: 3'- ucUCAGCua----UGUGCG-----------CACGUGUUCCc -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 175463 | 0.66 | 0.990956 |
Target: 5'- gGGGGUgGAcccgGCGCGCaacaUGCAaGAGGGg -3' miRNA: 3'- -UCUCAgCUa---UGUGCGc---ACGUgUUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 8756 | 0.66 | 0.990956 |
Target: 5'- gGGGGUgGAcccgGCGCGCaacaUGCAaGAGGGg -3' miRNA: 3'- -UCUCAgCUa---UGUGCGc---ACGUgUUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 111112 | 0.67 | 0.986777 |
Target: 5'- -cGGUCGcgACGCGgGgcagGguCAGGGGa -3' miRNA: 3'- ucUCAGCuaUGUGCgCa---CguGUUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 110174 | 0.67 | 0.986777 |
Target: 5'- cGAugaGGUGCugGUugaaGUGCACGGGGGc -3' miRNA: 3'- uCUcagCUAUGugCG----CACGUGUUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 26936 | 0.67 | 0.986777 |
Target: 5'- uAGAGUCccaGUcCAgaGCGUGCGCGugGGGGa -3' miRNA: 3'- -UCUCAGc--UAuGUg-CGCACGUGU--UCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 3032 | 0.67 | 0.986453 |
Target: 5'- gGGGGUUGGcagagauccaagGCACaCGUGgGCAGGGGu -3' miRNA: 3'- -UCUCAGCUa-----------UGUGcGCACgUGUUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 169739 | 0.67 | 0.986453 |
Target: 5'- gGGGGUUGGcagagauccaagGCACaCGUGgGCAGGGGu -3' miRNA: 3'- -UCUCAGCUa-----------UGUGcGCACgUGUUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 183755 | 0.67 | 0.984561 |
Target: 5'- cAGAGUUGGgcaaugggGCGgggaggggcuugugUGCGUGgGCGGGGGg -3' miRNA: 3'- -UCUCAGCUa-------UGU--------------GCGCACgUGUUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 17048 | 0.67 | 0.984561 |
Target: 5'- cAGAGUUGGgcaaugggGCGgggaggggcuugugUGCGUGgGCGGGGGg -3' miRNA: 3'- -UCUCAGCUa-------UGU--------------GCGCACgUGUUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 163436 | 0.67 | 0.983257 |
Target: 5'- aGGAGUcagguaCGAUGCAgGCGgggauggGCGCuuagGAGGGc -3' miRNA: 3'- -UCUCA------GCUAUGUgCGCa------CGUG----UUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 143546 | 0.67 | 0.983257 |
Target: 5'- gAGGGUcCGAgagACACGC-UGUgguaggggGCGAGGGu -3' miRNA: 3'- -UCUCA-GCUa--UGUGCGcACG--------UGUUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 110987 | 0.68 | 0.981251 |
Target: 5'- aGGAGgucaggcaGAgACAgGCGUcgGCGCGAGGGu -3' miRNA: 3'- -UCUCag------CUaUGUgCGCA--CGUGUUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 48054 | 0.68 | 0.979964 |
Target: 5'- cGGGGUCGAgGC-CGCGgggggcgccuucagGCGCAuggccAGGGa -3' miRNA: 3'- -UCUCAGCUaUGuGCGCa-------------CGUGU-----UCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 82645 | 0.68 | 0.979071 |
Target: 5'- cGGAGaaGAUACcCGCGUGC---GGGGu -3' miRNA: 3'- -UCUCagCUAUGuGCGCACGuguUCCC- -5' |
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3986 | 5' | -51.9 | NC_001650.1 | + | 78081 | 0.68 | 0.979071 |
Target: 5'- uAGGGcgugCGAgaacuacCACGUGUGCgACGGGGGc -3' miRNA: 3'- -UCUCa---GCUau-----GUGCGCACG-UGUUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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