miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3986 5' -51.9 NC_001650.1 + 3032 0.67 0.986453
Target:  5'- gGGGGUUGGcagagauccaagGCACaCGUGgGCAGGGGu -3'
miRNA:   3'- -UCUCAGCUa-----------UGUGcGCACgUGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 3373 0.7 0.931774
Target:  5'- cGGGGUCcauggGGUGCAgCGgGUGguCAGGGGu -3'
miRNA:   3'- -UCUCAG-----CUAUGU-GCgCACguGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 5730 0.7 0.946104
Target:  5'- gGGGGUUGuggGCACGggggucugaGUGCAUggGGGu -3'
miRNA:   3'- -UCUCAGCua-UGUGCg--------CACGUGuuCCC- -5'
3986 5' -51.9 NC_001650.1 + 8756 0.66 0.990956
Target:  5'- gGGGGUgGAcccgGCGCGCaacaUGCAaGAGGGg -3'
miRNA:   3'- -UCUCAgCUa---UGUGCGc---ACGUgUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 15644 0.71 0.89658
Target:  5'- gGGAGUCGGUGgGC-CG-GguCAGGGGg -3'
miRNA:   3'- -UCUCAGCUAUgUGcGCaCguGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 17048 0.67 0.984561
Target:  5'- cAGAGUUGGgcaaugggGCGgggaggggcuugugUGCGUGgGCGGGGGg -3'
miRNA:   3'- -UCUCAGCUa-------UGU--------------GCGCACgUGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 26936 0.67 0.986777
Target:  5'- uAGAGUCccaGUcCAgaGCGUGCGCGugGGGGa -3'
miRNA:   3'- -UCUCAGc--UAuGUg-CGCACGUGU--UCCC- -5'
3986 5' -51.9 NC_001650.1 + 28211 0.68 0.976708
Target:  5'- cGGG-CGAgggGCACGUGgugGUcacGCAGGGGg -3'
miRNA:   3'- uCUCaGCUa--UGUGCGCa--CG---UGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 28385 0.72 0.868415
Target:  5'- cGGGGUCccuGGaGgACGCGUGCGCGGGcGGg -3'
miRNA:   3'- -UCUCAG---CUaUgUGCGCACGUGUUC-CC- -5'
3986 5' -51.9 NC_001650.1 + 29030 0.68 0.976708
Target:  5'- aGGAGUacccGCACGCccucgggGCGCGGGGGg -3'
miRNA:   3'- -UCUCAgcuaUGUGCGca-----CGUGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 35493 0.69 0.950402
Target:  5'- aGGAG-CuGUACuuuuacguGCGCGUGCcCGAGGGg -3'
miRNA:   3'- -UCUCaGcUAUG--------UGCGCACGuGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 35587 0.66 0.994828
Target:  5'- cGGGGUCcg-GCGCGUGcgaGCGCcuGGGg -3'
miRNA:   3'- -UCUCAGcuaUGUGCGCa--CGUGuuCCC- -5'
3986 5' -51.9 NC_001650.1 + 38034 0.66 0.99301
Target:  5'- cAGGGa-GAUcCugGCGaacggggUGCGCAGGGGg -3'
miRNA:   3'- -UCUCagCUAuGugCGC-------ACGUGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 42260 0.74 0.793104
Target:  5'- uAGGGUCGAggGCagACGCG-GC-CGAGGGg -3'
miRNA:   3'- -UCUCAGCUa-UG--UGCGCaCGuGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 48054 0.68 0.979964
Target:  5'- cGGGGUCGAgGC-CGCGgggggcgccuucagGCGCAuggccAGGGa -3'
miRNA:   3'- -UCUCAGCUaUGuGCGCa-------------CGUGU-----UCCC- -5'
3986 5' -51.9 NC_001650.1 + 49543 0.66 0.992089
Target:  5'- -cGGUCGugggcgACACGCagcccgagaugGUGCACGGGGu -3'
miRNA:   3'- ucUCAGCua----UGUGCG-----------CACGUGUUCCc -5'
3986 5' -51.9 NC_001650.1 + 49867 0.69 0.950402
Target:  5'- cGAGcUCGAUGgGCGUGUGggaCACgGAGGGc -3'
miRNA:   3'- uCUC-AGCUAUgUGCGCAC---GUG-UUCCC- -5'
3986 5' -51.9 NC_001650.1 + 60685 0.66 0.994017
Target:  5'- gAGaAGUCGGUguuGCugGCGUcGCGCuucAGGu -3'
miRNA:   3'- -UC-UCAGCUA---UGugCGCA-CGUGu--UCCc -5'
3986 5' -51.9 NC_001650.1 + 72197 0.7 0.946104
Target:  5'- cGGGUgGAcagGCACGCcgagGUGCACGuGGGc -3'
miRNA:   3'- uCUCAgCUa--UGUGCG----CACGUGUuCCC- -5'
3986 5' -51.9 NC_001650.1 + 73560 0.68 0.971404
Target:  5'- ----cCGAggGgGCGCGUGCGCGGGGa -3'
miRNA:   3'- ucucaGCUa-UgUGCGCACGUGUUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.