miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3986 5' -51.9 NC_001650.1 + 125407 1.12 0.006425
Target:  5'- cAGAGUCGAUACACGCGUGCACAAGGGa -3'
miRNA:   3'- -UCUCAGCUAUGUGCGCACGUGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 122130 0.66 0.994017
Target:  5'- cGGGGUCGGcucggGgGCGgGggcgGCGgGAGGGg -3'
miRNA:   3'- -UCUCAGCUa----UgUGCgCa---CGUgUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 60685 0.66 0.994017
Target:  5'- gAGaAGUCGGUguuGCugGCGUcGCGCuucAGGu -3'
miRNA:   3'- -UC-UCAGCUA---UGugCGCA-CGUGu--UCCc -5'
3986 5' -51.9 NC_001650.1 + 49543 0.66 0.992089
Target:  5'- -cGGUCGugggcgACACGCagcccgagaugGUGCACGGGGu -3'
miRNA:   3'- ucUCAGCua----UGUGCG-----------CACGUGUUCCc -5'
3986 5' -51.9 NC_001650.1 + 111112 0.67 0.986777
Target:  5'- -cGGUCGcgACGCGgGgcagGguCAGGGGa -3'
miRNA:   3'- ucUCAGCuaUGUGCgCa---CguGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 26936 0.67 0.986777
Target:  5'- uAGAGUCccaGUcCAgaGCGUGCGCGugGGGGa -3'
miRNA:   3'- -UCUCAGc--UAuGUg-CGCACGUGU--UCCC- -5'
3986 5' -51.9 NC_001650.1 + 143546 0.67 0.983257
Target:  5'- gAGGGUcCGAgagACACGC-UGUgguaggggGCGAGGGu -3'
miRNA:   3'- -UCUCA-GCUa--UGUGCGcACG--------UGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 163436 0.67 0.983257
Target:  5'- aGGAGUcagguaCGAUGCAgGCGgggauggGCGCuuagGAGGGc -3'
miRNA:   3'- -UCUCA------GCUAUGUgCGCa------CGUG----UUCCC- -5'
3986 5' -51.9 NC_001650.1 + 110987 0.68 0.981251
Target:  5'- aGGAGgucaggcaGAgACAgGCGUcgGCGCGAGGGu -3'
miRNA:   3'- -UCUCag------CUaUGUgCGCA--CGUGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 78081 0.68 0.979071
Target:  5'- uAGGGcgugCGAgaacuacCACGUGUGCgACGGGGGc -3'
miRNA:   3'- -UCUCa---GCUau-----GUGCGCACG-UGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 126074 0.73 0.819836
Target:  5'- gAGAcGUCuGAUGCGagaG-GUGCACAAGGGa -3'
miRNA:   3'- -UCU-CAG-CUAUGUg--CgCACGUGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 72197 0.7 0.946104
Target:  5'- cGGGUgGAcagGCACGCcgagGUGCACGuGGGc -3'
miRNA:   3'- uCUCAgCUa--UGUGCG----CACGUGUuCCC- -5'
3986 5' -51.9 NC_001650.1 + 35493 0.69 0.950402
Target:  5'- aGGAG-CuGUACuuuuacguGCGCGUGCcCGAGGGg -3'
miRNA:   3'- -UCUCaGcUAUG--------UGCGCACGuGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 82624 0.69 0.954465
Target:  5'- -aGGUCGGUGUACGgGUGCGaguuuGGGGg -3'
miRNA:   3'- ucUCAGCUAUGUGCgCACGUgu---UCCC- -5'
3986 5' -51.9 NC_001650.1 + 155722 0.69 0.965283
Target:  5'- cGGAGUUGAccagggcgUGCAgCGCG-GC-CAGGGGc -3'
miRNA:   3'- -UCUCAGCU--------AUGU-GCGCaCGuGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 29030 0.68 0.976708
Target:  5'- aGGAGUacccGCACGCccucgggGCGCGGGGGg -3'
miRNA:   3'- -UCUCAgcuaUGUGCGca-----CGUGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 35587 0.66 0.994828
Target:  5'- cGGGGUCcg-GCGCGUGcgaGCGCcuGGGg -3'
miRNA:   3'- -UCUCAGcuaUGUGCGCa--CGUGuuCCC- -5'
3986 5' -51.9 NC_001650.1 + 28385 0.72 0.868415
Target:  5'- cGGGGUCccuGGaGgACGCGUGCGCGGGcGGg -3'
miRNA:   3'- -UCUCAG---CUaUgUGCGCACGUGUUC-CC- -5'
3986 5' -51.9 NC_001650.1 + 15644 0.71 0.89658
Target:  5'- gGGAGUCGGUGgGC-CG-GguCAGGGGg -3'
miRNA:   3'- -UCUCAGCUAUgUGcGCaCguGUUCCC- -5'
3986 5' -51.9 NC_001650.1 + 182351 0.71 0.89658
Target:  5'- gGGAGUCGGUGgGC-CG-GguCAGGGGg -3'
miRNA:   3'- -UCUCAGCUAUgUGcGCaCguGUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.