miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3987 3' -51.1 NC_001650.1 + 62841 0.66 0.99544
Target:  5'- -cCGGCCGG-GgcgauggccagcaugGUGGAGAAGggUGGCa -3'
miRNA:   3'- uuGCCGGCCaCa--------------UACCUUUUCa-GUCG- -5'
3987 3' -51.1 NC_001650.1 + 181954 0.66 0.995369
Target:  5'- --gGGCagGGUucaGUGUGGggGGGUgCAGUa -3'
miRNA:   3'- uugCCGg-CCA---CAUACCuuUUCA-GUCG- -5'
3987 3' -51.1 NC_001650.1 + 26917 0.66 0.995369
Target:  5'- cGCGGCCagcuGGUG-GUGGuAGAGUCccaguccagAGCg -3'
miRNA:   3'- uUGCCGG----CCACaUACCuUUUCAG---------UCG- -5'
3987 3' -51.1 NC_001650.1 + 15247 0.66 0.995369
Target:  5'- --gGGCagGGUucaGUGUGGggGGGUgCAGUa -3'
miRNA:   3'- uugCCGg-CCA---CAUACCuuUUCA-GUCG- -5'
3987 3' -51.1 NC_001650.1 + 82624 0.66 0.99461
Target:  5'- --aGGUCGGUGUAcGGGugcGAGUUugggGGCg -3'
miRNA:   3'- uugCCGGCCACAUaCCUu--UUCAG----UCG- -5'
3987 3' -51.1 NC_001650.1 + 182287 0.66 0.993753
Target:  5'- -uCGGCUGGUugGUGGguGGGUgGGUg -3'
miRNA:   3'- uuGCCGGCCAcaUACCuuUUCAgUCG- -5'
3987 3' -51.1 NC_001650.1 + 15580 0.66 0.993753
Target:  5'- -uCGGCUGGUugGUGGguGGGUgGGUg -3'
miRNA:   3'- uuGCCGGCCAcaUACCuuUUCAgUCG- -5'
3987 3' -51.1 NC_001650.1 + 36620 0.66 0.99279
Target:  5'- cGCGGCgGGUGcucacGGAcgGG-CAGCa -3'
miRNA:   3'- uUGCCGgCCACaua--CCUuuUCaGUCG- -5'
3987 3' -51.1 NC_001650.1 + 60185 0.66 0.991712
Target:  5'- --aGGCCGGgGUcUGcGGGcggcGGGUCAGCa -3'
miRNA:   3'- uugCCGGCCaCAuAC-CUU----UUCAGUCG- -5'
3987 3' -51.1 NC_001650.1 + 76792 0.66 0.991712
Target:  5'- uGCGGCCuGUGgccauuUGG-AAAGUcCAGCc -3'
miRNA:   3'- uUGCCGGcCACau----ACCuUUUCA-GUCG- -5'
3987 3' -51.1 NC_001650.1 + 29981 0.66 0.991712
Target:  5'- cGCGGCCguguacgcgcaGGUGUuugaccUGGcggccGAGGUCAGCc -3'
miRNA:   3'- uUGCCGG-----------CCACAu-----ACCu----UUUCAGUCG- -5'
3987 3' -51.1 NC_001650.1 + 85878 0.66 0.991712
Target:  5'- uGCGGCCGGcgGUGcGGAAGAucccUCGGg -3'
miRNA:   3'- uUGCCGGCCa-CAUaCCUUUUc---AGUCg -5'
3987 3' -51.1 NC_001650.1 + 52560 0.67 0.99051
Target:  5'- cGGCGGCgGGggcguucgaGUcgGGggGucGUCGGCu -3'
miRNA:   3'- -UUGCCGgCCa--------CAuaCCuuUu-CAGUCG- -5'
3987 3' -51.1 NC_001650.1 + 130770 0.67 0.99051
Target:  5'- --aGGCUGGggccccugGUGGAGAAGUCcagggaGGCg -3'
miRNA:   3'- uugCCGGCCaca-----UACCUUUUCAG------UCG- -5'
3987 3' -51.1 NC_001650.1 + 175897 0.67 0.99051
Target:  5'- uGGgGGCUaugggGGUGUGUGGGu-GGUgGGCu -3'
miRNA:   3'- -UUgCCGG-----CCACAUACCUuuUCAgUCG- -5'
3987 3' -51.1 NC_001650.1 + 9190 0.67 0.99051
Target:  5'- uGGgGGCUaugggGGUGUGUGGGu-GGUgGGCu -3'
miRNA:   3'- -UUgCCGG-----CCACAUACCUuuUCAgUCG- -5'
3987 3' -51.1 NC_001650.1 + 115269 0.67 0.984285
Target:  5'- --aGGCCGGgcagggugGUAgccagGGAGGGGggCGGCg -3'
miRNA:   3'- uugCCGGCCa-------CAUa----CCUUUUCa-GUCG- -5'
3987 3' -51.1 NC_001650.1 + 115227 0.68 0.980194
Target:  5'- -cCGGCCGcUGca--GAAAGGUCAGCg -3'
miRNA:   3'- uuGCCGGCcACauacCUUUUCAGUCG- -5'
3987 3' -51.1 NC_001650.1 + 1852 0.68 0.975358
Target:  5'- aGGgGGCgGGUGaugaaaUGUGGGGAGGUgGGUg -3'
miRNA:   3'- -UUgCCGgCCAC------AUACCUUUUCAgUCG- -5'
3987 3' -51.1 NC_001650.1 + 168559 0.68 0.975358
Target:  5'- aGGgGGCgGGUGaugaaaUGUGGGGAGGUgGGUg -3'
miRNA:   3'- -UUgCCGgCCAC------AUACCUUUUCAgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.