miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3989 3' -48.4 NC_001650.1 + 172413 0.66 0.999687
Target:  5'- aGUGCAUguGGGucugugaucAUGGGGGGUUgugGGCa -3'
miRNA:   3'- -CACGUGuuCCC---------UGCCCUCUAAaa-UUG- -5'
3989 3' -48.4 NC_001650.1 + 140949 0.66 0.999687
Target:  5'- uGUGCcaauaGAGGGACGGGG---UUUGAg -3'
miRNA:   3'- -CACGug---UUCCCUGCCCUcuaAAAUUg -5'
3989 3' -48.4 NC_001650.1 + 5706 0.66 0.999687
Target:  5'- aGUGCAUguGGGucugugaucAUGGGGGGUUgugGGCa -3'
miRNA:   3'- -CACGUGuuCCC---------UGCCCUCUAAaa-UUG- -5'
3989 3' -48.4 NC_001650.1 + 21508 0.66 0.999605
Target:  5'- gGUGCGCc-GGGAcCGGGGGGgcuacuGCu -3'
miRNA:   3'- -CACGUGuuCCCU-GCCCUCUaaaau-UG- -5'
3989 3' -48.4 NC_001650.1 + 52443 0.66 0.999605
Target:  5'- -gGCGCAGGGGAagcgUGGGAacUUUUGu- -3'
miRNA:   3'- caCGUGUUCCCU----GCCCUcuAAAAUug -5'
3989 3' -48.4 NC_001650.1 + 164862 0.66 0.999605
Target:  5'- -gGgGCGGGaGGAUGGGAGGcccUGACu -3'
miRNA:   3'- caCgUGUUC-CCUGCCCUCUaaaAUUG- -5'
3989 3' -48.4 NC_001650.1 + 180575 0.66 0.999505
Target:  5'- cGUG-AC-GGGGACGGGGGGUc----- -3'
miRNA:   3'- -CACgUGuUCCCUGCCCUCUAaaauug -5'
3989 3' -48.4 NC_001650.1 + 13868 0.66 0.999505
Target:  5'- cGUG-AC-GGGGACGGGGGGUc----- -3'
miRNA:   3'- -CACgUGuUCCCUGCCCUCUAaaauug -5'
3989 3' -48.4 NC_001650.1 + 126903 0.66 0.999505
Target:  5'- uGUGgGCGAGGGGgGGcGAGAc------ -3'
miRNA:   3'- -CACgUGUUCCCUgCC-CUCUaaaauug -5'
3989 3' -48.4 NC_001650.1 + 3507 0.66 0.999384
Target:  5'- gGUGgGCGGGcGGGCGGGcAGGUgggGAg -3'
miRNA:   3'- -CACgUGUUC-CCUGCCC-UCUAaaaUUg -5'
3989 3' -48.4 NC_001650.1 + 11814 0.66 0.999384
Target:  5'- aUGCAUGAGGGcccCGGGuGAUUa---- -3'
miRNA:   3'- cACGUGUUCCCu--GCCCuCUAAaauug -5'
3989 3' -48.4 NC_001650.1 + 178521 0.66 0.999384
Target:  5'- aUGCAUGAGGGcccCGGGuGAUUa---- -3'
miRNA:   3'- cACGUGUUCCCu--GCCCuCUAAaauug -5'
3989 3' -48.4 NC_001650.1 + 163752 0.66 0.999384
Target:  5'- cUGggUGAGGGugGGGGGAUa----- -3'
miRNA:   3'- cACguGUUCCCugCCCUCUAaaauug -5'
3989 3' -48.4 NC_001650.1 + 58676 0.66 0.999384
Target:  5'- cGUGCGcCGAGGGACGcGGAc-------- -3'
miRNA:   3'- -CACGU-GUUCCCUGC-CCUcuaaaauug -5'
3989 3' -48.4 NC_001650.1 + 126811 0.66 0.999384
Target:  5'- cGUGCGCGcccgggccgcaGGGGGUGGGGGAg------ -3'
miRNA:   3'- -CACGUGU-----------UCCCUGCCCUCUaaaauug -5'
3989 3' -48.4 NC_001650.1 + 125422 0.66 0.999384
Target:  5'- cGUGCACAAGGGaACuGGAuGAa------ -3'
miRNA:   3'- -CACGUGUUCCC-UGcCCU-CUaaaauug -5'
3989 3' -48.4 NC_001650.1 + 170214 0.66 0.999384
Target:  5'- gGUGgGCGGGcGGGCGGGcAGGUgggGAg -3'
miRNA:   3'- -CACgUGUUC-CCUGCCC-UCUAaaaUUg -5'
3989 3' -48.4 NC_001650.1 + 93288 0.66 0.999237
Target:  5'- gGUGCugGuuAGGGACGGGGc-------- -3'
miRNA:   3'- -CACGugU--UCCCUGCCCUcuaaaauug -5'
3989 3' -48.4 NC_001650.1 + 183785 0.66 0.999237
Target:  5'- uGUGUGCGuGGG-CGGGGGGag-UGGCu -3'
miRNA:   3'- -CACGUGUuCCCuGCCCUCUaaaAUUG- -5'
3989 3' -48.4 NC_001650.1 + 20679 0.66 0.999237
Target:  5'- --aCGgGGGGGACGGGGGGUc----- -3'
miRNA:   3'- cacGUgUUCCCUGCCCUCUAaaauug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.