miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3989 3' -48.4 NC_001650.1 + 126092 1.11 0.012459
Target:  5'- gGUGCACAAGGGACGGGAGAUUUUAACa -3'
miRNA:   3'- -CACGUGUUCCCUGCCCUCUAAAAUUG- -5'
3989 3' -48.4 NC_001650.1 + 78900 0.82 0.540007
Target:  5'- gGUGCGCAgcGGGGACGGGAGGc------ -3'
miRNA:   3'- -CACGUGU--UCCCUGCCCUCUaaaauug -5'
3989 3' -48.4 NC_001650.1 + 124332 0.75 0.877574
Target:  5'- -aGCACAcaguucGGGGGCGGGGauGAUUaUGACa -3'
miRNA:   3'- caCGUGU------UCCCUGCCCU--CUAAaAUUG- -5'
3989 3' -48.4 NC_001650.1 + 153949 0.75 0.884976
Target:  5'- uUGCACGggccuucuaGGGGGCGGGAGGggu--GCa -3'
miRNA:   3'- cACGUGU---------UCCCUGCCCUCUaaaauUG- -5'
3989 3' -48.4 NC_001650.1 + 31001 0.75 0.894228
Target:  5'- aUGCACAGgagcagggccuggcuGGGGCGGGGGGcgcccucccacuuUUUUGACg -3'
miRNA:   3'- cACGUGUU---------------CCCUGCCCUCU-------------AAAAUUG- -5'
3989 3' -48.4 NC_001650.1 + 103826 0.74 0.912066
Target:  5'- cUGCACGuucuGGGGCGcGGAGAUggcgGGCu -3'
miRNA:   3'- cACGUGUu---CCCUGC-CCUCUAaaa-UUG- -5'
3989 3' -48.4 NC_001650.1 + 126469 0.74 0.915772
Target:  5'- -cGCGCGugGGGGACGGGGGuccgucgagGACg -3'
miRNA:   3'- caCGUGU--UCCCUGCCCUCuaaaa----UUG- -5'
3989 3' -48.4 NC_001650.1 + 42116 0.74 0.918191
Target:  5'- -cGCGCGAGGG-CGGGuGAgugUUUGAa -3'
miRNA:   3'- caCGUGUUCCCuGCCCuCUa--AAAUUg -5'
3989 3' -48.4 NC_001650.1 + 128333 0.74 0.924052
Target:  5'- gGUGgGCGAGGuGAUGGGGGAcc-UGACg -3'
miRNA:   3'- -CACgUGUUCC-CUGCCCUCUaaaAUUG- -5'
3989 3' -48.4 NC_001650.1 + 166721 0.73 0.939554
Target:  5'- -gGCGCGAGGGGCaaaagaccccgggGGGAGAg---AACa -3'
miRNA:   3'- caCGUGUUCCCUG-------------CCCUCUaaaaUUG- -5'
3989 3' -48.4 NC_001650.1 + 14 0.73 0.939554
Target:  5'- -gGCGCGAGGGGCaaaagaccccgggGGGAGAg---AACa -3'
miRNA:   3'- caCGUGUUCCCUG-------------CCCUCUaaaaUUG- -5'
3989 3' -48.4 NC_001650.1 + 37609 0.73 0.944856
Target:  5'- uGUGCGCcauGAGGGugGaGGAGGUgu--GCg -3'
miRNA:   3'- -CACGUG---UUCCCugC-CCUCUAaaauUG- -5'
3989 3' -48.4 NC_001650.1 + 88699 0.73 0.949403
Target:  5'- -gGCGCGggcgauggagcGGGGGCGGGAGGg---GGCu -3'
miRNA:   3'- caCGUGU-----------UCCCUGCCCUCUaaaaUUG- -5'
3989 3' -48.4 NC_001650.1 + 157869 0.72 0.96507
Target:  5'- gGUGCACAccAGGGuguugaGGGAGAggggGGCg -3'
miRNA:   3'- -CACGUGU--UCCCug----CCCUCUaaaaUUG- -5'
3989 3' -48.4 NC_001650.1 + 39048 0.72 0.968381
Target:  5'- cUGCGC-GGGGACGGGGGuu----GCa -3'
miRNA:   3'- cACGUGuUCCCUGCCCUCuaaaauUG- -5'
3989 3' -48.4 NC_001650.1 + 24049 0.72 0.968381
Target:  5'- -gGCACGacgucGGGGACGGGGGccugugGGCg -3'
miRNA:   3'- caCGUGU-----UCCCUGCCCUCuaaaa-UUG- -5'
3989 3' -48.4 NC_001650.1 + 15325 0.71 0.971464
Target:  5'- cUGCACGGGGGGCaGaGGAGGUa----- -3'
miRNA:   3'- cACGUGUUCCCUG-C-CCUCUAaaauug -5'
3989 3' -48.4 NC_001650.1 + 182032 0.71 0.971464
Target:  5'- cUGCACGGGGGGCaGaGGAGGUa----- -3'
miRNA:   3'- cACGUGUUCCCUG-C-CCUCUAaaauug -5'
3989 3' -48.4 NC_001650.1 + 165920 0.71 0.974324
Target:  5'- -gGCACGgaGGGGAgGGGGGAgggggAACc -3'
miRNA:   3'- caCGUGU--UCCCUgCCCUCUaaaa-UUG- -5'
3989 3' -48.4 NC_001650.1 + 78847 0.71 0.974324
Target:  5'- cUGCucGCGgacGGGGACGGGAGGUa----- -3'
miRNA:   3'- cACG--UGU---UCCCUGCCCUCUAaaauug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.