miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3989 5' -50.5 NC_001650.1 + 115180 0.66 0.993497
Target:  5'- aGGCCGAGGGCUUCCacgagaaccaggcgCUCGUGa-- -3'
miRNA:   3'- gUCGGUUUUUGAGGGga------------GAGCACaaa -5'
3989 5' -50.5 NC_001650.1 + 157032 0.67 0.992384
Target:  5'- -cGCUGGAAACUCCCUgcaCUCGUa--- -3'
miRNA:   3'- guCGGUUUUUGAGGGGa--GAGCAcaaa -5'
3989 5' -50.5 NC_001650.1 + 70886 0.67 0.992384
Target:  5'- gGGCCcAAGAUUgUCCUCUCuGUGUg- -3'
miRNA:   3'- gUCGGuUUUUGAgGGGAGAG-CACAaa -5'
3989 5' -50.5 NC_001650.1 + 1985 0.67 0.989974
Target:  5'- aCAGCCcaccuCUCCCCUCUCc----- -3'
miRNA:   3'- -GUCGGuuuuuGAGGGGAGAGcacaaa -5'
3989 5' -50.5 NC_001650.1 + 28746 0.67 0.987006
Target:  5'- gGGCCAAGAuCUCCCCcCUCuuccuGUGg-- -3'
miRNA:   3'- gUCGGUUUUuGAGGGGaGAG-----CACaaa -5'
3989 5' -50.5 NC_001650.1 + 170582 0.69 0.968062
Target:  5'- aAGCCcccuACUCCCCUCUCa----- -3'
miRNA:   3'- gUCGGuuuuUGAGGGGAGAGcacaaa -5'
3989 5' -50.5 NC_001650.1 + 3875 0.69 0.968062
Target:  5'- aAGCCcccuACUCCCCUCUCa----- -3'
miRNA:   3'- gUCGGuuuuUGAGGGGAGAGcacaaa -5'
3989 5' -50.5 NC_001650.1 + 166321 0.7 0.957446
Target:  5'- aCAGCCAGAGGCcCaCCCUCaUUGUGc-- -3'
miRNA:   3'- -GUCGGUUUUUGaG-GGGAG-AGCACaaa -5'
3989 5' -50.5 NC_001650.1 + 89833 0.7 0.939868
Target:  5'- uGGgUAAGAGCUCCgaCCUCUCGUGc-- -3'
miRNA:   3'- gUCgGUUUUUGAGG--GGAGAGCACaaa -5'
3989 5' -50.5 NC_001650.1 + 168337 0.71 0.929546
Target:  5'- uGGCCAGAGAugguCUCCCCUCacaGUGg-- -3'
miRNA:   3'- gUCGGUUUUU----GAGGGGAGag-CACaaa -5'
3989 5' -50.5 NC_001650.1 + 1630 0.71 0.929546
Target:  5'- uGGCCAGAGAugguCUCCCCUCacaGUGg-- -3'
miRNA:   3'- gUCGGUUUUU----GAGGGGAGag-CACaaa -5'
3989 5' -50.5 NC_001650.1 + 68366 0.71 0.923996
Target:  5'- uCAGCCAccgcccAACUgCCCUCUgGUGUa- -3'
miRNA:   3'- -GUCGGUuu----UUGAgGGGAGAgCACAaa -5'
3989 5' -50.5 NC_001650.1 + 172749 0.72 0.89921
Target:  5'- gAGCCGGAGGCUCCCCaCUCa----- -3'
miRNA:   3'- gUCGGUUUUUGAGGGGaGAGcacaaa -5'
3989 5' -50.5 NC_001650.1 + 6042 0.72 0.89921
Target:  5'- gAGCCGGAGGCUCCCCaCUCa----- -3'
miRNA:   3'- gUCGGUUUUUGAGGGGaGAGcacaaa -5'
3989 5' -50.5 NC_001650.1 + 60751 0.72 0.885297
Target:  5'- uCGGCCAGGAGCUCCCCgUagGUGc-- -3'
miRNA:   3'- -GUCGGUUUUUGAGGGGaGagCACaaa -5'
3989 5' -50.5 NC_001650.1 + 118264 0.74 0.829252
Target:  5'- -cGCCAGGAACUCCUCUaucugCUCGUGc-- -3'
miRNA:   3'- guCGGUUUUUGAGGGGA-----GAGCACaaa -5'
3989 5' -50.5 NC_001650.1 + 126127 1.07 0.013836
Target:  5'- aCAGCCAAAAACUCCCCUCUCGUGUUUa -3'
miRNA:   3'- -GUCGGUUUUUGAGGGGAGAGCACAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.