miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
399 3' -57.6 AC_000011.1 + 11844 0.66 0.456464
Target:  5'- aGCUCCUGGUCGcucAGcucgcgccGCCUgcUGGCGCu- -3'
miRNA:   3'- -CGAGGAUCAGCu--UC--------UGGG--GCCGCGuu -5'
399 3' -57.6 AC_000011.1 + 31999 0.66 0.436443
Target:  5'- aGCU-CUGGUacUGcAGGCCCCGGCGgGc -3'
miRNA:   3'- -CGAgGAUCA--GCuUCUGGGGCCGCgUu -5'
399 3' -57.6 AC_000011.1 + 24446 0.66 0.426625
Target:  5'- cGCUUCUucgccgacgCGGAGACCCU-GCGCAAg -3'
miRNA:   3'- -CGAGGAuca------GCUUCUGGGGcCGCGUU- -5'
399 3' -57.6 AC_000011.1 + 2253 0.67 0.416939
Target:  5'- uCUCCcgaccacUCGAAGACCuagucagcacCCGGCGCAGu -3'
miRNA:   3'- cGAGGauc----AGCUUCUGG----------GGCCGCGUU- -5'
399 3' -57.6 AC_000011.1 + 5335 0.67 0.379574
Target:  5'- aGUUCgUAGUUGAGcGCCUCGGcCGCGu -3'
miRNA:   3'- -CGAGgAUCAGCUUcUGGGGCC-GCGUu -5'
399 3' -57.6 AC_000011.1 + 10174 0.68 0.353061
Target:  5'- cGCUCggUGG-CGggGGCgCCgGGCGCGAg -3'
miRNA:   3'- -CGAGg-AUCaGCuuCUG-GGgCCGCGUU- -5'
399 3' -57.6 AC_000011.1 + 25514 0.68 0.327885
Target:  5'- aGCUCCUcaccggucugggGGUCGAgguAGACCCCgcGGCccuuuuucaGCAAg -3'
miRNA:   3'- -CGAGGA------------UCAGCU---UCUGGGG--CCG---------CGUU- -5'
399 3' -57.6 AC_000011.1 + 15809 0.69 0.311853
Target:  5'- gGCUCUUGG-CGcGGGCguaCCGGCGCGc -3'
miRNA:   3'- -CGAGGAUCaGCuUCUGg--GGCCGCGUu -5'
399 3' -57.6 AC_000011.1 + 34562 0.69 0.288933
Target:  5'- cGCUUCUcuGGUgGAGGAUcaCCCGGUGCu- -3'
miRNA:   3'- -CGAGGA--UCAgCUUCUG--GGGCCGCGuu -5'
399 3' -57.6 AC_000011.1 + 22112 0.69 0.274401
Target:  5'- uGCUCUccacGUCGAGGuCCUCGGCGUu- -3'
miRNA:   3'- -CGAGGau--CAGCUUCuGGGGCCGCGuu -5'
399 3' -57.6 AC_000011.1 + 24587 0.7 0.267357
Target:  5'- aGCUCCacGUUGGAGAUcuugcaggCCUGGCGCAc -3'
miRNA:   3'- -CGAGGauCAGCUUCUG--------GGGCCGCGUu -5'
399 3' -57.6 AC_000011.1 + 16851 1.08 0.000384
Target:  5'- gGCUCCUAGUCGAAGACCCCGGCGCAAg -3'
miRNA:   3'- -CGAGGAUCAGCUUCUGGGGCCGCGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.