miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3991 5' -46.9 NC_001650.1 + 105806 0.66 0.999972
Target:  5'- cUUGCUGAagauguggauggaGACcCUCAGGGUCaccuCUAUCa -3'
miRNA:   3'- -AGCGAUU-------------UUGuGAGUCCUAG----GAUAGc -5'
3991 5' -46.9 NC_001650.1 + 146371 0.66 0.999963
Target:  5'- cUGCacAAACACgUAGGcuAUCCUAUCGu -3'
miRNA:   3'- aGCGauUUUGUGaGUCC--UAGGAUAGC- -5'
3991 5' -46.9 NC_001650.1 + 118313 0.66 0.999963
Target:  5'- aCGCUGAcgGGC-CUgAGGuUCUUGUCGu -3'
miRNA:   3'- aGCGAUU--UUGuGAgUCCuAGGAUAGC- -5'
3991 5' -46.9 NC_001650.1 + 55454 0.66 0.99995
Target:  5'- -aGCauGGGCACggUCAGGGUCCUGgacaCGg -3'
miRNA:   3'- agCGauUUUGUG--AGUCCUAGGAUa---GC- -5'
3991 5' -46.9 NC_001650.1 + 57823 0.66 0.99995
Target:  5'- -gGCUcAGACACUCc-GAUCCUAUg- -3'
miRNA:   3'- agCGAuUUUGUGAGucCUAGGAUAgc -5'
3991 5' -46.9 NC_001650.1 + 38726 0.66 0.99995
Target:  5'- -aGCUGAccaggagcccccGGCccuuucccagGCUCAGGAUCCUGaggCGg -3'
miRNA:   3'- agCGAUU------------UUG----------UGAGUCCUAGGAUa--GC- -5'
3991 5' -46.9 NC_001650.1 + 153396 0.66 0.99995
Target:  5'- cCGCcAGcACGCUCAGGGagCUcUCGg -3'
miRNA:   3'- aGCGaUUuUGUGAGUCCUagGAuAGC- -5'
3991 5' -46.9 NC_001650.1 + 125741 0.66 0.99995
Target:  5'- gUCGCUGuuacggggaGAGC-CUgGacuGGAUCCUGUCa -3'
miRNA:   3'- -AGCGAU---------UUUGuGAgU---CCUAGGAUAGc -5'
3991 5' -46.9 NC_001650.1 + 89156 0.66 0.999934
Target:  5'- cCGCcu-GGCGgaCAGGGUCCUGUg- -3'
miRNA:   3'- aGCGauuUUGUgaGUCCUAGGAUAgc -5'
3991 5' -46.9 NC_001650.1 + 84882 0.66 0.999934
Target:  5'- cCGCU--GACACcaUCAGGAaaCUGUCu -3'
miRNA:   3'- aGCGAuuUUGUG--AGUCCUagGAUAGc -5'
3991 5' -46.9 NC_001650.1 + 82443 0.66 0.999934
Target:  5'- -gGCUGGuaccuGgGCUCGGGGUCCcugAUCu -3'
miRNA:   3'- agCGAUUu----UgUGAGUCCUAGGa--UAGc -5'
3991 5' -46.9 NC_001650.1 + 56814 0.67 0.999912
Target:  5'- cUCGCUGcccagguccGGGCuCUCGGGGcUCCUggCGg -3'
miRNA:   3'- -AGCGAU---------UUUGuGAGUCCU-AGGAuaGC- -5'
3991 5' -46.9 NC_001650.1 + 30191 0.67 0.999912
Target:  5'- cCGC-GAGGCcCUgGGGGUCCUGaCGg -3'
miRNA:   3'- aGCGaUUUUGuGAgUCCUAGGAUaGC- -5'
3991 5' -46.9 NC_001650.1 + 24459 0.67 0.999912
Target:  5'- cUCGCcu--ACACccccuUCAGGAUCCUGa-- -3'
miRNA:   3'- -AGCGauuuUGUG-----AGUCCUAGGAUagc -5'
3991 5' -46.9 NC_001650.1 + 62583 0.67 0.999912
Target:  5'- aUCGCUAAuauuaggcccAUACUCAGGAggcagcagcccgUCaCUGUCa -3'
miRNA:   3'- -AGCGAUUu---------UGUGAGUCCU------------AG-GAUAGc -5'
3991 5' -46.9 NC_001650.1 + 159744 0.68 0.999505
Target:  5'- cUUGUUGGGGCGgUuCAGGAUCCUGa-- -3'
miRNA:   3'- -AGCGAUUUUGUgA-GUCCUAGGAUagc -5'
3991 5' -46.9 NC_001650.1 + 66736 0.68 0.999384
Target:  5'- cUCGCg---GCGCcgCAGGAgCCUAUCu -3'
miRNA:   3'- -AGCGauuuUGUGa-GUCCUaGGAUAGc -5'
3991 5' -46.9 NC_001650.1 + 88336 0.69 0.999062
Target:  5'- uUCGaggcGGACGCgggCAGGGUCCUGaCGg -3'
miRNA:   3'- -AGCgau-UUUGUGa--GUCCUAGGAUaGC- -5'
3991 5' -46.9 NC_001650.1 + 151628 0.69 0.998315
Target:  5'- gCGCUAAAGCACUgauaaUAGuGGUCC-AUCa -3'
miRNA:   3'- aGCGAUUUUGUGA-----GUC-CUAGGaUAGc -5'
3991 5' -46.9 NC_001650.1 + 101719 0.7 0.997577
Target:  5'- gCGCgguacAGGCACUCGGGGUCgUcgCa -3'
miRNA:   3'- aGCGau---UUUGUGAGUCCUAGgAuaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.