miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3993 3' -55.1 NC_001650.1 + 125604 0.66 0.939339
Target:  5'- uGGAGauGCUGCacaCGUGGCUGCCaGAGc -3'
miRNA:   3'- uUUUCacCGACGg--GUACUGACGG-CUC- -5'
3993 3' -55.1 NC_001650.1 + 182953 0.66 0.929247
Target:  5'- uGGAGGUGGcCUGCCCAcUGACcucaugugGCCc-- -3'
miRNA:   3'- -UUUUCACC-GACGGGU-ACUGa-------CGGcuc -5'
3993 3' -55.1 NC_001650.1 + 16246 0.66 0.929247
Target:  5'- uGGAGGUGGcCUGCCCAcUGACcucaugugGCCc-- -3'
miRNA:   3'- -UUUUCACC-GACGGGU-ACUGa-------CGGcuc -5'
3993 3' -55.1 NC_001650.1 + 50973 0.66 0.923832
Target:  5'- ---cGUGcGcCUGCCCGUGugcgaGCUGCgGGGg -3'
miRNA:   3'- uuuuCAC-C-GACGGGUAC-----UGACGgCUC- -5'
3993 3' -55.1 NC_001650.1 + 58162 0.67 0.886221
Target:  5'- gGGGGGUGG-UGgCgAUGGCUGCCGuGg -3'
miRNA:   3'- -UUUUCACCgACgGgUACUGACGGCuC- -5'
3993 3' -55.1 NC_001650.1 + 110719 0.68 0.856488
Target:  5'- -cAGGUGGCgagcUGgCCGUGGCUGaggcCCGGGg -3'
miRNA:   3'- uuUUCACCG----ACgGGUACUGAC----GGCUC- -5'
3993 3' -55.1 NC_001650.1 + 52369 0.68 0.831976
Target:  5'- ---cGUGGCUGCCCG-GGgaGgCGAGc -3'
miRNA:   3'- uuuuCACCGACGGGUaCUgaCgGCUC- -5'
3993 3' -55.1 NC_001650.1 + 128275 0.68 0.831976
Target:  5'- aGGGGGUGGg-GCCCAUGGagagccaGCCGGGg -3'
miRNA:   3'- -UUUUCACCgaCGGGUACUga-----CGGCUC- -5'
3993 3' -55.1 NC_001650.1 + 70258 0.69 0.82342
Target:  5'- ---uGUGGCUGCCCGUcaccuucgaGGCUGUCu-- -3'
miRNA:   3'- uuuuCACCGACGGGUA---------CUGACGGcuc -5'
3993 3' -55.1 NC_001650.1 + 156611 0.69 0.814685
Target:  5'- --uAGUuGCUGCCCGaGAggGCCGAGg -3'
miRNA:   3'- uuuUCAcCGACGGGUaCUgaCGGCUC- -5'
3993 3' -55.1 NC_001650.1 + 57498 0.69 0.796712
Target:  5'- gAAAAGUGaUUGUCUcUGACUGCUGAGu -3'
miRNA:   3'- -UUUUCACcGACGGGuACUGACGGCUC- -5'
3993 3' -55.1 NC_001650.1 + 85145 0.7 0.768626
Target:  5'- ---uGUGGCUGCgUG-GACUGCCaGAGg -3'
miRNA:   3'- uuuuCACCGACGgGUaCUGACGG-CUC- -5'
3993 3' -55.1 NC_001650.1 + 73480 0.71 0.688929
Target:  5'- cGGGGGcGGCUGCUgG-GGCUGCUGAGg -3'
miRNA:   3'- -UUUUCaCCGACGGgUaCUGACGGCUC- -5'
3993 3' -55.1 NC_001650.1 + 62760 0.71 0.677618
Target:  5'- uAAAAGUGGC-GCCCGaagacggUGAuCUGCuCGAGg -3'
miRNA:   3'- -UUUUCACCGaCGGGU-------ACU-GACG-GCUC- -5'
3993 3' -55.1 NC_001650.1 + 21681 0.72 0.647606
Target:  5'- -cGGGgccugGGCUGCa-GUGACUGCUGAGa -3'
miRNA:   3'- uuUUCa----CCGACGggUACUGACGGCUC- -5'
3993 3' -55.1 NC_001650.1 + 133301 0.74 0.504606
Target:  5'- gGGAGGgGGCUGCCCAggaGGC-GCCGGGc -3'
miRNA:   3'- -UUUUCaCCGACGGGUa--CUGaCGGCUC- -5'
3993 3' -55.1 NC_001650.1 + 129978 0.75 0.485125
Target:  5'- ---cGUGGCgcggGCCCugaGGCUGCUGAGg -3'
miRNA:   3'- uuuuCACCGa---CGGGua-CUGACGGCUC- -5'
3993 3' -55.1 NC_001650.1 + 126683 1.06 0.005146
Target:  5'- gAAAAGUGGCUGCCCAUGACUGCCGAGu -3'
miRNA:   3'- -UUUUCACCGACGGGUACUGACGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.