miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3997 3' -54.9 NC_001650.1 + 52317 0.66 0.948918
Target:  5'- cCGCCCuGGCCCGCccguccuccuuGGGAgg--GAAGAg -3'
miRNA:   3'- -GUGGGuCUGGGCG-----------CCCUaucaCUUUU- -5'
3997 3' -54.9 NC_001650.1 + 156516 0.66 0.948918
Target:  5'- gAgUCAGGCCCGgGGGGcgaguGUGAGGGa -3'
miRNA:   3'- gUgGGUCUGGGCgCCCUau---CACUUUU- -5'
3997 3' -54.9 NC_001650.1 + 128263 0.66 0.948918
Target:  5'- gGCCCGuGCCCGagGGGGUGGggcccaUGGAGAg -3'
miRNA:   3'- gUGGGUcUGGGCg-CCCUAUC------ACUUUU- -5'
3997 3' -54.9 NC_001650.1 + 110738 0.66 0.948918
Target:  5'- gGCUgAGGCCCGgGGGGccGUGGc-- -3'
miRNA:   3'- gUGGgUCUGGGCgCCCUauCACUuuu -5'
3997 3' -54.9 NC_001650.1 + 119844 0.67 0.930013
Target:  5'- gCGCCCAG-CCCGCagacccugaacaGGGAgaccgGGcUGAAGAu -3'
miRNA:   3'- -GUGGGUCuGGGCG------------CCCUa----UC-ACUUUU- -5'
3997 3' -54.9 NC_001650.1 + 136640 0.67 0.930013
Target:  5'- gCGCCCugAGGCuCCGCGGGcagAGUGc--- -3'
miRNA:   3'- -GUGGG--UCUG-GGCGCCCua-UCACuuuu -5'
3997 3' -54.9 NC_001650.1 + 103354 0.67 0.930013
Target:  5'- -uCCUGGAuCCuCGCGGGGcgAGUGGAGGg -3'
miRNA:   3'- guGGGUCU-GG-GCGCCCUa-UCACUUUU- -5'
3997 3' -54.9 NC_001650.1 + 103918 0.67 0.924686
Target:  5'- gACCCAgGACCC-CGGGGacgaccuuuGUGAAGAu -3'
miRNA:   3'- gUGGGU-CUGGGcGCCCUau-------CACUUUU- -5'
3997 3' -54.9 NC_001650.1 + 133957 0.67 0.919116
Target:  5'- gGCCgCAGuGCCCGCGGaGcAUaaaAGUGAAAAu -3'
miRNA:   3'- gUGG-GUC-UGGGCGCC-C-UA---UCACUUUU- -5'
3997 3' -54.9 NC_001650.1 + 8564 0.67 0.913306
Target:  5'- -cCCCAGcCCUGCGGGGUGccGggGu -3'
miRNA:   3'- guGGGUCuGGGCGCCCUAUcaCuuUu -5'
3997 3' -54.9 NC_001650.1 + 31721 0.67 0.913306
Target:  5'- cCACCCAaaaaACCCa-GGGAUGGUGAu-- -3'
miRNA:   3'- -GUGGGUc---UGGGcgCCCUAUCACUuuu -5'
3997 3' -54.9 NC_001650.1 + 175271 0.67 0.913306
Target:  5'- -cCCCAGcCCUGCGGGGUGccGggGu -3'
miRNA:   3'- guGGGUCuGGGCGCCCUAUcaCuuUu -5'
3997 3' -54.9 NC_001650.1 + 126816 0.67 0.907255
Target:  5'- gCGCCCGGG-CCGCagGGGGUGG-GGGAGc -3'
miRNA:   3'- -GUGGGUCUgGGCG--CCCUAUCaCUUUU- -5'
3997 3' -54.9 NC_001650.1 + 106112 0.67 0.907255
Target:  5'- gCGCUCGGGCCUggccacaaGgGGGGUGGUGGu-- -3'
miRNA:   3'- -GUGGGUCUGGG--------CgCCCUAUCACUuuu -5'
3997 3' -54.9 NC_001650.1 + 109250 0.67 0.907255
Target:  5'- aACCCcccuucCCCGCGGGGUggcgauAGUGggGGg -3'
miRNA:   3'- gUGGGucu---GGGCGCCCUA------UCACuuUU- -5'
3997 3' -54.9 NC_001650.1 + 126129 0.68 0.894444
Target:  5'- gGCCCAGGCCCcgGCGGGcggcuGcGAGGAu -3'
miRNA:   3'- gUGGGUCUGGG--CGCCCuau--CaCUUUU- -5'
3997 3' -54.9 NC_001650.1 + 137722 0.68 0.88769
Target:  5'- cCGCCCcGACgCCG-GGGAgagGGUGAAc- -3'
miRNA:   3'- -GUGGGuCUG-GGCgCCCUa--UCACUUuu -5'
3997 3' -54.9 NC_001650.1 + 37762 0.68 0.88769
Target:  5'- cCGCCUAGGgCCGCGGGucuauUAGaGGAGc -3'
miRNA:   3'- -GUGGGUCUgGGCGCCCu----AUCaCUUUu -5'
3997 3' -54.9 NC_001650.1 + 25407 0.68 0.88769
Target:  5'- aCACUCGGGCUCGCGGcGGUugcgGGAGAg -3'
miRNA:   3'- -GUGGGUCUGGGCGCC-CUAuca-CUUUU- -5'
3997 3' -54.9 NC_001650.1 + 172352 0.68 0.8735
Target:  5'- gGCCCccuuAGACCCcCGGGGcuUAGUGGGu- -3'
miRNA:   3'- gUGGG----UCUGGGcGCCCU--AUCACUUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.