miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3997 5' -56.3 NC_001650.1 + 26564 0.66 0.942407
Target:  5'- uGUUCUCGCUGCCccugcucucGGGGCUCAcgguGGAGGc -3'
miRNA:   3'- gUAGGAGUGGCGG---------CUCUGGGU----CUUCC- -5'
3997 5' -56.3 NC_001650.1 + 93639 0.66 0.942407
Target:  5'- aCAUCCUCACCuuucucaugaaGCaCGAGGCgguguCCAGGuacguGGa -3'
miRNA:   3'- -GUAGGAGUGG-----------CG-GCUCUG-----GGUCUu----CC- -5'
3997 5' -56.3 NC_001650.1 + 126743 0.66 0.942407
Target:  5'- --aCC-CGCCGCCGGGGaCCAGGGc- -3'
miRNA:   3'- guaGGaGUGGCGGCUCUgGGUCUUcc -5'
3997 5' -56.3 NC_001650.1 + 4776 0.66 0.942407
Target:  5'- --gCCUCugCaaauccagGCCGGGGCUC-GAGGGg -3'
miRNA:   3'- guaGGAGugG--------CGGCUCUGGGuCUUCC- -5'
3997 5' -56.3 NC_001650.1 + 130826 0.66 0.942407
Target:  5'- gGUCCUCcaggaggaggcgGCCGCCcugcugcucGAGGCcaagaCCGGggGGc -3'
miRNA:   3'- gUAGGAG------------UGGCGG---------CUCUG-----GGUCuuCC- -5'
3997 5' -56.3 NC_001650.1 + 129647 0.66 0.942407
Target:  5'- ----gUgGCgGCCGAGuuCCAGAGGGa -3'
miRNA:   3'- guaggAgUGgCGGCUCugGGUCUUCC- -5'
3997 5' -56.3 NC_001650.1 + 171483 0.66 0.942407
Target:  5'- --gCCUCugCaaauccagGCCGGGGCUC-GAGGGg -3'
miRNA:   3'- guaGGAGugG--------CGGCUCUGGGuCUUCC- -5'
3997 5' -56.3 NC_001650.1 + 66324 0.66 0.937824
Target:  5'- --aCCUCugCGCCGAGGuggugcagcagcCCCAcGAGu -3'
miRNA:   3'- guaGGAGugGCGGCUCU------------GGGUcUUCc -5'
3997 5' -56.3 NC_001650.1 + 74511 0.66 0.937824
Target:  5'- -cUCCUCACCGUgGuGcCCCcgguguuuggcaGGGAGGc -3'
miRNA:   3'- guAGGAGUGGCGgCuCuGGG------------UCUUCC- -5'
3997 5' -56.3 NC_001650.1 + 53351 0.66 0.937824
Target:  5'- gAUCCUgugagaugCGCCggGCCGuGACUCAGuGGGa -3'
miRNA:   3'- gUAGGA--------GUGG--CGGCuCUGGGUCuUCC- -5'
3997 5' -56.3 NC_001650.1 + 51143 0.66 0.937824
Target:  5'- ---gCUCGCCGCCGGccgcGGCUUGGGAGa -3'
miRNA:   3'- guagGAGUGGCGGCU----CUGGGUCUUCc -5'
3997 5' -56.3 NC_001650.1 + 94029 0.66 0.937824
Target:  5'- -uUCCcCACCGCCG----CCAGggGGc -3'
miRNA:   3'- guAGGaGUGGCGGCucugGGUCuuCC- -5'
3997 5' -56.3 NC_001650.1 + 133878 0.66 0.937353
Target:  5'- gGUCCccggggcUCGaggagGCCGGGGCCgGGAGGGa -3'
miRNA:   3'- gUAGG-------AGUgg---CGGCUCUGGgUCUUCC- -5'
3997 5' -56.3 NC_001650.1 + 54182 0.66 0.933015
Target:  5'- gGUCCagUCGCCGguggagcucCCGGGccGCCCAGGcucAGGg -3'
miRNA:   3'- gUAGG--AGUGGC---------GGCUC--UGGGUCU---UCC- -5'
3997 5' -56.3 NC_001650.1 + 19312 0.66 0.933015
Target:  5'- ------gGCCGCggUGGGGCCCGGggGGu -3'
miRNA:   3'- guaggagUGGCG--GCUCUGGGUCuuCC- -5'
3997 5' -56.3 NC_001650.1 + 165384 0.66 0.933015
Target:  5'- gCAUCCagGCCugaaugGCCGAGGCCguGcuGGc -3'
miRNA:   3'- -GUAGGagUGG------CGGCUCUGGguCuuCC- -5'
3997 5' -56.3 NC_001650.1 + 62017 0.66 0.933015
Target:  5'- --cCCUCGCCGCgGuccAGGCCUcguGGAAGu -3'
miRNA:   3'- guaGGAGUGGCGgC---UCUGGG---UCUUCc -5'
3997 5' -56.3 NC_001650.1 + 49505 0.66 0.927977
Target:  5'- uCcgCCUCugcaGCCGCCucuGGGGCauCCGGggGGu -3'
miRNA:   3'- -GuaGGAG----UGGCGG---CUCUG--GGUCuuCC- -5'
3997 5' -56.3 NC_001650.1 + 23633 0.66 0.927977
Target:  5'- --cCCUCGCCugGCCccaccucaagGGGGCgCAGggGGa -3'
miRNA:   3'- guaGGAGUGG--CGG----------CUCUGgGUCuuCC- -5'
3997 5' -56.3 NC_001650.1 + 23198 0.66 0.927461
Target:  5'- --cCCUCucCCGCCGcauuccaAGACCCcccauGGAGGc -3'
miRNA:   3'- guaGGAGu-GGCGGC-------UCUGGGu----CUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.