miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
400 3' -53.6 AC_000011.1 + 13412 0.66 0.710521
Target:  5'- ----cGCCGCGG-CAgcACCcucGCGGCCg -3'
miRNA:   3'- gaagaUGGCGCCaGUa-UGGu--CGUCGG- -5'
400 3' -53.6 AC_000011.1 + 16604 0.66 0.710521
Target:  5'- ----cGCCGCGGUCGgcagcACCuGCuGCa -3'
miRNA:   3'- gaagaUGGCGCCAGUa----UGGuCGuCGg -5'
400 3' -53.6 AC_000011.1 + 21823 0.66 0.710521
Target:  5'- gUUCUGCCG-GGUCucggcaugGCCcGCGGgCa -3'
miRNA:   3'- gAAGAUGGCgCCAGua------UGGuCGUCgG- -5'
400 3' -53.6 AC_000011.1 + 35346 0.66 0.699277
Target:  5'- -aUCUGCUGCaGGUgA-ACCAGgAGCa -3'
miRNA:   3'- gaAGAUGGCG-CCAgUaUGGUCgUCGg -5'
400 3' -53.6 AC_000011.1 + 17040 0.66 0.699277
Target:  5'- --cCUGCCGCccuGGUgcggagagUGUACCGccGCGGCCg -3'
miRNA:   3'- gaaGAUGGCG---CCA--------GUAUGGU--CGUCGG- -5'
400 3' -53.6 AC_000011.1 + 15807 0.67 0.595214
Target:  5'- -cUCuUGgCGCGGgCGUACCGGCGcgcguccGCCa -3'
miRNA:   3'- gaAG-AUgGCGCCaGUAUGGUCGU-------CGG- -5'
400 3' -53.6 AC_000011.1 + 16014 0.69 0.528694
Target:  5'- ----cGCCGCGGgcgggaCAUGCUGGCgauGGCCg -3'
miRNA:   3'- gaagaUGGCGCCa-----GUAUGGUCG---UCGG- -5'
400 3' -53.6 AC_000011.1 + 16914 0.69 0.517668
Target:  5'- aCUUgcGCCGgGGUCuucgACUAGgAGCCg -3'
miRNA:   3'- -GAAgaUGGCgCCAGua--UGGUCgUCGG- -5'
400 3' -53.6 AC_000011.1 + 8113 0.69 0.517668
Target:  5'- uCUUCUGCCucgaugGUGGUCAUGCUGaCgAGCCc -3'
miRNA:   3'- -GAAGAUGG------CGCCAGUAUGGUcG-UCGG- -5'
400 3' -53.6 AC_000011.1 + 12791 0.69 0.517668
Target:  5'- --gCUGCCGCuGUcCGUgaagggggccACCAGCAGCa -3'
miRNA:   3'- gaaGAUGGCGcCA-GUA----------UGGUCGUCGg -5'
400 3' -53.6 AC_000011.1 + 17257 0.69 0.506736
Target:  5'- cCUUCUACggCGCGGUUuucuuccUCGGUAGCCc -3'
miRNA:   3'- -GAAGAUG--GCGCCAGuau----GGUCGUCGG- -5'
400 3' -53.6 AC_000011.1 + 17007 0.7 0.45266
Target:  5'- ----gACCGCGGUagaagcgCGUGCCgcGGUAGCCc -3'
miRNA:   3'- gaagaUGGCGCCA-------GUAUGG--UCGUCGG- -5'
400 3' -53.6 AC_000011.1 + 23875 0.7 0.423347
Target:  5'- aCUUCUACC-CGGUCuucgcgGUGCCcgaGGCccuGGCCa -3'
miRNA:   3'- -GAAGAUGGcGCCAG------UAUGG---UCG---UCGG- -5'
400 3' -53.6 AC_000011.1 + 24320 0.71 0.413506
Target:  5'- -----cCCGUGGUCAgcgACgAGCAGCUg -3'
miRNA:   3'- gaagauGGCGCCAGUa--UGgUCGUCGG- -5'
400 3' -53.6 AC_000011.1 + 13365 0.71 0.413506
Target:  5'- --gCUGCCGCGGcgGUGCCcgaGGCcGCCa -3'
miRNA:   3'- gaaGAUGGCGCCagUAUGG---UCGuCGG- -5'
400 3' -53.6 AC_000011.1 + 11564 0.71 0.413506
Target:  5'- --gCUGCCGCuGUCcgagaaGCUGGCGGCCa -3'
miRNA:   3'- gaaGAUGGCGcCAGua----UGGUCGUCGG- -5'
400 3' -53.6 AC_000011.1 + 24230 0.71 0.384846
Target:  5'- -gUCaugAgCGCGGUCAUggACCAGguGCUc -3'
miRNA:   3'- gaAGa--UgGCGCCAGUA--UGGUCguCGG- -5'
400 3' -53.6 AC_000011.1 + 16958 1.01 0.003183
Target:  5'- gCUUCUACC-CGGUCAUACCAGCAGCCg -3'
miRNA:   3'- -GAAGAUGGcGCCAGUAUGGUCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.