Results 1 - 20 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
400 | 5' | -61.3 | AC_000011.1 | + | 16991 | 1.05 | 0.000295 |
Target: 5'- cAAGACCACCACUCGCCGCCGCCGUCGc -3' miRNA: 3'- -UUCUGGUGGUGAGCGGCGGCGGCAGC- -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 15992 | 0.76 | 0.059815 |
Target: 5'- -cGAUgGCCGCU-GCCGCCGCCGUgGc -3' miRNA: 3'- uuCUGgUGGUGAgCGGCGGCGGCAgC- -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 33805 | 0.74 | 0.081939 |
Target: 5'- cAGGCC-CCGCagcagUCGCUGCCGCCGcCGc -3' miRNA: 3'- uUCUGGuGGUG-----AGCGGCGGCGGCaGC- -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 13994 | 0.73 | 0.097111 |
Target: 5'- gGGGGCUGCa--UCGCCGCCGCCGcCa -3' miRNA: 3'- -UUCUGGUGgugAGCGGCGGCGGCaGc -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 10211 | 0.71 | 0.124916 |
Target: 5'- -cGAUgGCCGCUCuaccgccaGCCGCCGCCG-Ca -3' miRNA: 3'- uuCUGgUGGUGAG--------CGGCGGCGGCaGc -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 15834 | 0.71 | 0.128427 |
Target: 5'- --uGCCGCCggGCgaugCGCCGCCGCCGg-- -3' miRNA: 3'- uucUGGUGG--UGa---GCGGCGGCGGCagc -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 11878 | 0.71 | 0.132029 |
Target: 5'- cGGACCugCACUgGCagcccaGCCGCCGg-- -3' miRNA: 3'- uUCUGGugGUGAgCGg-----CGGCGGCagc -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 26131 | 0.71 | 0.143399 |
Target: 5'- cAGuCCACCuGCU-GCCGCCGCUGUgGa -3' miRNA: 3'- uUCuGGUGG-UGAgCGGCGGCGGCAgC- -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 10620 | 0.7 | 0.155657 |
Target: 5'- -cGACCGCgaugGCUCGCUGCCGuaGUCu -3' miRNA: 3'- uuCUGGUGg---UGAGCGGCGGCggCAGc -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 15707 | 0.69 | 0.178205 |
Target: 5'- -cGGCCACCAcCUgGUCGaucaCGUCGUCGa -3' miRNA: 3'- uuCUGGUGGU-GAgCGGCg---GCGGCAGC- -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 32346 | 0.69 | 0.178205 |
Target: 5'- -cGGCCACCAag-GCCGCCGCCc--- -3' miRNA: 3'- uuCUGGUGGUgagCGGCGGCGGcagc -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 10919 | 0.69 | 0.193089 |
Target: 5'- -cGACCGCCGCg-GCCGCCGUgagCGg -3' miRNA: 3'- uuCUGGUGGUGagCGGCGGCGgcaGC- -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 9755 | 0.69 | 0.198287 |
Target: 5'- aAAGACCugguGCUcCUCGCCaccauCCGCCGUCu -3' miRNA: 3'- -UUCUGG----UGGuGAGCGGc----GGCGGCAGc -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 27141 | 0.68 | 0.232091 |
Target: 5'- uGGACCACUGC-CGCCGCuucCGCUGcuUCGc -3' miRNA: 3'- uUCUGGUGGUGaGCGGCG---GCGGC--AGC- -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 24940 | 0.67 | 0.257234 |
Target: 5'- --cGCCACCuGCUCG-CGCUGCCcUCGg -3' miRNA: 3'- uucUGGUGG-UGAGCgGCGGCGGcAGC- -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 9962 | 0.67 | 0.263858 |
Target: 5'- cAAG-CCAUC-CUCGCCGagcgCGUCGUCGc -3' miRNA: 3'- -UUCuGGUGGuGAGCGGCg---GCGGCAGC- -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 34958 | 0.67 | 0.277521 |
Target: 5'- gGAGAUggCACCuCUCGCCcCCGCUGUg- -3' miRNA: 3'- -UUCUG--GUGGuGAGCGGcGGCGGCAgc -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 10310 | 0.66 | 0.284561 |
Target: 5'- ---uCCACCAC-CGCCGCCGgCaUCa -3' miRNA: 3'- uucuGGUGGUGaGCGGCGGCgGcAGc -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 21331 | 0.66 | 0.287417 |
Target: 5'- gAAGGCCAgCCAgugcucgcccccgguCUCGCgGCCGgCCGUg- -3' miRNA: 3'- -UUCUGGU-GGU---------------GAGCGgCGGC-GGCAgc -5' |
|||||||
400 | 5' | -61.3 | AC_000011.1 | + | 24398 | 0.66 | 0.291742 |
Target: 5'- uAGGACCcaGCCACcggGCCaGCUGCuCGUCGc -3' miRNA: 3'- -UUCUGG--UGGUGag-CGG-CGGCG-GCAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home