miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4004 3' -49.7 NC_001650.1 + 110241 0.66 0.997695
Target:  5'- -cGCCCuGUGGcuGGCAgaAAGGGUGGGAAa -3'
miRNA:   3'- caCGGG-CGCC--UCGUa-UUUUCACUUUU- -5'
4004 3' -49.7 NC_001650.1 + 109260 0.66 0.99674
Target:  5'- --cCCCGCGGGGUGgcgauAGUGggGGg -3'
miRNA:   3'- cacGGGCGCCUCGUauuu-UCACuuUU- -5'
4004 3' -49.7 NC_001650.1 + 175641 0.66 0.99674
Target:  5'- uUGgCCGagggGGAGCGUGGGGGUGuGAGg -3'
miRNA:   3'- cACgGGCg---CCUCGUAUUUUCACuUUU- -5'
4004 3' -49.7 NC_001650.1 + 28583 0.66 0.99674
Target:  5'- -cGUUCGCGGGGCucgu-GGUGAGc- -3'
miRNA:   3'- caCGGGCGCCUCGuauuuUCACUUuu -5'
4004 3' -49.7 NC_001650.1 + 27957 0.66 0.99674
Target:  5'- -gGCCCGCGG-GCu----GGUGAc-- -3'
miRNA:   3'- caCGGGCGCCuCGuauuuUCACUuuu -5'
4004 3' -49.7 NC_001650.1 + 31980 0.66 0.996629
Target:  5'- cUGCCuCGCGGAGUccgccucuGGUGAGc- -3'
miRNA:   3'- cACGG-GCGCCUCGuauuu---UCACUUuu -5'
4004 3' -49.7 NC_001650.1 + 58982 0.66 0.996152
Target:  5'- -gGCCCGggaGGAGCAgggacAGGAGcUGGAGAa -3'
miRNA:   3'- caCGGGCg--CCUCGUa----UUUUC-ACUUUU- -5'
4004 3' -49.7 NC_001650.1 + 128129 0.67 0.99548
Target:  5'- cUGCaCCaaggGCGaGAGCGUGGAgauAGUGAAGAa -3'
miRNA:   3'- cACG-GG----CGC-CUCGUAUUU---UCACUUUU- -5'
4004 3' -49.7 NC_001650.1 + 47583 0.67 0.99385
Target:  5'- cUGCCCGCGGAGCcucAGGGc----- -3'
miRNA:   3'- cACGGGCGCCUCGuauUUUCacuuuu -5'
4004 3' -49.7 NC_001650.1 + 30684 0.67 0.992873
Target:  5'- -cGCgCCGCGGGGCGagcgGGAGGggggcgGGAGAg -3'
miRNA:   3'- caCG-GGCGCCUCGUa---UUUUCa-----CUUUU- -5'
4004 3' -49.7 NC_001650.1 + 91608 0.67 0.992873
Target:  5'- gGUGUCUGUGGugAGCAggcUGGAGGUGAu-- -3'
miRNA:   3'- -CACGGGCGCC--UCGU---AUUUUCACUuuu -5'
4004 3' -49.7 NC_001650.1 + 16261 0.67 0.991777
Target:  5'- -gGCCCGgGGGGCGggaauagGGuuGUGAGGu -3'
miRNA:   3'- caCGGGCgCCUCGUa------UUuuCACUUUu -5'
4004 3' -49.7 NC_001650.1 + 182968 0.67 0.991777
Target:  5'- -gGCCCGgGGGGCGggaauagGGuuGUGAGGu -3'
miRNA:   3'- caCGGGCgCCUCGUa------UUuuCACUUUu -5'
4004 3' -49.7 NC_001650.1 + 29043 0.67 0.991777
Target:  5'- -cGCCCuCGGGGCGcgGGGGGUGGc-- -3'
miRNA:   3'- caCGGGcGCCUCGUa-UUUUCACUuuu -5'
4004 3' -49.7 NC_001650.1 + 30490 0.67 0.991777
Target:  5'- -cGCCCGCGGAcGCGUAc--GUGu--- -3'
miRNA:   3'- caCGGGCGCCU-CGUAUuuuCACuuuu -5'
4004 3' -49.7 NC_001650.1 + 27046 0.67 0.991777
Target:  5'- uGUGCa-GCGGGGCAUGAcgcuGGUGcAGGAg -3'
miRNA:   3'- -CACGggCGCCUCGUAUUu---UCAC-UUUU- -5'
4004 3' -49.7 NC_001650.1 + 155609 0.68 0.990551
Target:  5'- gGUGCCCGgGGAGUuggAAAAGa----- -3'
miRNA:   3'- -CACGGGCgCCUCGua-UUUUCacuuuu -5'
4004 3' -49.7 NC_001650.1 + 156522 0.68 0.985998
Target:  5'- -gGCCCGgGGGGCGagu--GUGAGGGa -3'
miRNA:   3'- caCGGGCgCCUCGUauuuuCACUUUU- -5'
4004 3' -49.7 NC_001650.1 + 132163 0.68 0.984157
Target:  5'- -gGCCgGCGGGGCGgaGAAGGUGc--- -3'
miRNA:   3'- caCGGgCGCCUCGUa-UUUUCACuuuu -5'
4004 3' -49.7 NC_001650.1 + 85294 0.68 0.984157
Target:  5'- cUGCUCGCGGAGUuuGUGugcggcaggaagGAGGUGAu-- -3'
miRNA:   3'- cACGGGCGCCUCG--UAU------------UUUCACUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.