miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4004 5' -54.3 NC_001650.1 + 180829 0.66 0.97198
Target:  5'- uUACCggGGGUccuaagaUGGcCGCCCCGCCc- -3'
miRNA:   3'- -GUGGaaCUCAaa-----ACU-GCGGGGCGGcu -5'
4004 5' -54.3 NC_001650.1 + 14122 0.66 0.97198
Target:  5'- uUACCggGGGUccuaagaUGGcCGCCCCGCCc- -3'
miRNA:   3'- -GUGGaaCUCAaa-----ACU-GCGGGGCGGcu -5'
4004 5' -54.3 NC_001650.1 + 181771 0.66 0.969098
Target:  5'- cCGCUggGGGggaaggGACgGCCCCGCCc- -3'
miRNA:   3'- -GUGGaaCUCaaaa--CUG-CGGGGCGGcu -5'
4004 5' -54.3 NC_001650.1 + 15064 0.66 0.969098
Target:  5'- cCGCUggGGGggaaggGACgGCCCCGCCc- -3'
miRNA:   3'- -GUGGaaCUCaaaa--CUG-CGGGGCGGcu -5'
4004 5' -54.3 NC_001650.1 + 61954 0.66 0.969098
Target:  5'- --aCUUGAGcag-GugGCCCaCGCUGGa -3'
miRNA:   3'- gugGAACUCaaaaCugCGGG-GCGGCU- -5'
4004 5' -54.3 NC_001650.1 + 87094 0.66 0.96727
Target:  5'- cCACCgugucuagcagggugUUGGGggg-GAUGCCCUGCuCGAg -3'
miRNA:   3'- -GUGG---------------AACUCaaaaCUGCGGGGCG-GCU- -5'
4004 5' -54.3 NC_001650.1 + 120369 0.66 0.96601
Target:  5'- gACCUgGAGUc----CGCCCCGCUGu -3'
miRNA:   3'- gUGGAaCUCAaaacuGCGGGGCGGCu -5'
4004 5' -54.3 NC_001650.1 + 146574 0.66 0.962711
Target:  5'- cCACCUUGAGgaacccGACGgggggcCCCCGCgCGc -3'
miRNA:   3'- -GUGGAACUCaaaa--CUGC------GGGGCG-GCu -5'
4004 5' -54.3 NC_001650.1 + 62818 0.66 0.962025
Target:  5'- --gCUUGAGgcgcgaggcGGCGCCCCcgGCCGGg -3'
miRNA:   3'- gugGAACUCaaaa-----CUGCGGGG--CGGCU- -5'
4004 5' -54.3 NC_001650.1 + 112224 0.67 0.955458
Target:  5'- aCACCUccuugGAGacg-GcCGCCCCGCCc- -3'
miRNA:   3'- -GUGGAa----CUCaaaaCuGCGGGGCGGcu -5'
4004 5' -54.3 NC_001650.1 + 62162 0.67 0.951496
Target:  5'- gCGCCUgauGUg--GGCcaGCCCCGCCGc -3'
miRNA:   3'- -GUGGAacuCAaaaCUG--CGGGGCGGCu -5'
4004 5' -54.3 NC_001650.1 + 60600 0.67 0.94288
Target:  5'- cCGCCcgaaaaagucUGGGgcguaGGCGCCCUGCCGGu -3'
miRNA:   3'- -GUGGa---------ACUCaaaa-CUGCGGGGCGGCU- -5'
4004 5' -54.3 NC_001650.1 + 66751 0.67 0.938221
Target:  5'- gACggUGGGg---GGCGCUCCGCCGc -3'
miRNA:   3'- gUGgaACUCaaaaCUGCGGGGCGGCu -5'
4004 5' -54.3 NC_001650.1 + 89292 0.68 0.928191
Target:  5'- gACCUccUGAGgg-UGgagagggcgcACGCCCUGCUGAc -3'
miRNA:   3'- gUGGA--ACUCaaaAC----------UGCGGGGCGGCU- -5'
4004 5' -54.3 NC_001650.1 + 99787 0.7 0.848512
Target:  5'- aGCCUcucUGAGUcaacucCGCCCCGCUGGa -3'
miRNA:   3'- gUGGA---ACUCAaaacu-GCGGGGCGGCU- -5'
4004 5' -54.3 NC_001650.1 + 28760 0.72 0.770037
Target:  5'- gCGCCUucgGGGUcUUUGACgguGCCgCCGCCGGa -3'
miRNA:   3'- -GUGGAa--CUCA-AAACUG---CGG-GGCGGCU- -5'
4004 5' -54.3 NC_001650.1 + 156154 0.72 0.741364
Target:  5'- gCACCagcagcGGGUg--GAUGCCCCGCUGGa -3'
miRNA:   3'- -GUGGaa----CUCAaaaCUGCGGGGCGGCU- -5'
4004 5' -54.3 NC_001650.1 + 46196 0.76 0.53974
Target:  5'- uUACCUggagGAGg--UGAUGCCCCagGCCGAg -3'
miRNA:   3'- -GUGGAa---CUCaaaACUGCGGGG--CGGCU- -5'
4004 5' -54.3 NC_001650.1 + 133998 1.09 0.005076
Target:  5'- cCACCUUGAGUUUUGACGCCCCGCCGAg -3'
miRNA:   3'- -GUGGAACUCAAAACUGCGGGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.