miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 118115 0.66 0.821203
Target:  5'- -uACaGCCCcgCCAGGuGCCCGcCCACCu -3'
miRNA:   3'- ccUGaUGGG--GGUCU-CGGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 21525 0.66 0.821203
Target:  5'- gGGGCUACUgCUgggAGGGCCgCGGCUGCgGu -3'
miRNA:   3'- -CCUGAUGGgGG---UCUCGG-GCUGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 8331 0.66 0.821203
Target:  5'- ----cACCCCCAuAGCCCccACCACCc -3'
miRNA:   3'- ccugaUGGGGGUcUCGGGc-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 175038 0.66 0.821203
Target:  5'- ----cACCCCCAuAGCCCccACCACCc -3'
miRNA:   3'- ccugaUGGGGGUcUCGGGc-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 19396 0.66 0.821203
Target:  5'- gGGACguuUGCCgCgGGGGUCugcucgCGGCCGCCGg -3'
miRNA:   3'- -CCUG---AUGGgGgUCUCGG------GCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 38102 0.66 0.821203
Target:  5'- gGGACcaggccaagUACUCCCugcGGGGCCaguucccccugcUGACCACCa -3'
miRNA:   3'- -CCUG---------AUGGGGG---UCUCGG------------GCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 90838 0.66 0.820389
Target:  5'- gGGGgUGCCCaucuuggCCAGcGCCCcaaaGGCCGCCc -3'
miRNA:   3'- -CCUgAUGGG-------GGUCuCGGG----CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 65109 0.66 0.820389
Target:  5'- aGGGCUucACCUCCAaccaccuGAGCUCGgugGCCACgGu -3'
miRNA:   3'- -CCUGA--UGGGGGU-------CUCGGGC---UGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 131652 0.66 0.820389
Target:  5'- cGACgACCCCCcGAcucgaacGCCCccGCCGCCGc -3'
miRNA:   3'- cCUGaUGGGGGuCU-------CGGGc-UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 117476 0.66 0.818757
Target:  5'- cGGAgcGCCCCCcaccgucaccagcuGGuuacuGGCCCuGACCGCCu -3'
miRNA:   3'- -CCUgaUGGGGG--------------UC-----UCGGG-CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 162211 0.66 0.816298
Target:  5'- ----gACCCCCAGAuuauaccuagcuugcGCCCaugGACCACUa -3'
miRNA:   3'- ccugaUGGGGGUCU---------------CGGG---CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 59746 0.66 0.816298
Target:  5'- gGGGCccgugGCCCCCGGGggcgaggcGCCCcccacggacacgcugGACUACCu -3'
miRNA:   3'- -CCUGa----UGGGGGUCU--------CGGG---------------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 85237 0.66 0.812997
Target:  5'- -uACUACCCCCucAGCCCccuGGCCuuCGg -3'
miRNA:   3'- ccUGAUGGGGGucUCGGG---CUGGugGC- -5'
4007 5' -60.3 NC_001650.1 + 7049 0.66 0.812997
Target:  5'- uGGACaGCCCCCAuuGGGCCaugGGCUuuauuGCCc -3'
miRNA:   3'- -CCUGaUGGGGGU--CUCGGg--CUGG-----UGGc -5'
4007 5' -60.3 NC_001650.1 + 7395 0.66 0.812997
Target:  5'- gGGACaGCCCCCAuuGGGCCacgGGCUuuauuGCCc -3'
miRNA:   3'- -CCUGaUGGGGGU--CUCGGg--CUGG-----UGGc -5'
4007 5' -60.3 NC_001650.1 + 164426 0.66 0.812997
Target:  5'- gGGGCgUGCUCuaCCAGAGaccCCCGGCuCACCc -3'
miRNA:   3'- -CCUG-AUGGG--GGUCUC---GGGCUG-GUGGc -5'
4007 5' -60.3 NC_001650.1 + 174102 0.66 0.812997
Target:  5'- gGGACaGCCCCCAuuGGGCCacgGGCUuuauuGCCc -3'
miRNA:   3'- -CCUGaUGGGGGU--CUCGGg--CUGG-----UGGc -5'
4007 5' -60.3 NC_001650.1 + 94093 0.66 0.812997
Target:  5'- -aACUACUCCCAGuucauagaccaGGaCCUGuCCGCCGu -3'
miRNA:   3'- ccUGAUGGGGGUC-----------UC-GGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 131565 0.66 0.812997
Target:  5'- gGGGCggagaaACCCCgAGGccgagguccuGCCCGugacCCACCGc -3'
miRNA:   3'- -CCUGa-----UGGGGgUCU----------CGGGCu---GGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 133306 0.66 0.812997
Target:  5'- gGGGCUGCCCaggaggcgCCGGGcgaggggacGCCCGAgCCAgCa -3'
miRNA:   3'- -CCUGAUGGG--------GGUCU---------CGGGCU-GGUgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.