miRNA display CGI


Results 1 - 20 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 167318 0.66 0.769896
Target:  5'- cGGGCUGCCgCCCucccccGGGCCC--CCAUUGg -3'
miRNA:   3'- -CCUGAUGG-GGGu-----CUCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 93396 0.66 0.769896
Target:  5'- uGGGC-ACCCCCA---CCCugugGACCACCa -3'
miRNA:   3'- -CCUGaUGGGGGUcucGGG----CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 131810 0.66 0.769002
Target:  5'- aGGGCcuuCCUguucaggCCGGGGCgguggCCGGCCGCCGa -3'
miRNA:   3'- -CCUGau-GGG-------GGUCUCG-----GGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 54897 0.66 0.778768
Target:  5'- gGGAUUcugaGCCCCCGGcucgcGGCCUcgcucgGGCgGCCGg -3'
miRNA:   3'- -CCUGA----UGGGGGUC-----UCGGG------CUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 24166 0.66 0.778768
Target:  5'- uGACguccgagACCCCCGGGGUCgCGcuggagguGCCGCUGu -3'
miRNA:   3'- cCUGa------UGGGGGUCUCGG-GC--------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 45225 0.66 0.787522
Target:  5'- cGGGCUcACCCCCAaAGCCaggcGCC-CCa -3'
miRNA:   3'- -CCUGA-UGGGGGUcUCGGgc--UGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 120933 0.66 0.778768
Target:  5'- -cGCUGgCCa-AGAGCCUgcuGACCACCGa -3'
miRNA:   3'- ccUGAUgGGggUCUCGGG---CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 21637 0.66 0.787522
Target:  5'- -aGCUGCCCgCGGGGCugggguccuacCUGACCAgCGg -3'
miRNA:   3'- ccUGAUGGGgGUCUCG-----------GGCUGGUgGC- -5'
4007 5' -60.3 NC_001650.1 + 127311 0.66 0.79615
Target:  5'- cGACUACCacgcccaCCAGAGCaaauCCGCCa -3'
miRNA:   3'- cCUGAUGGg------GGUCUCGggcuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 611 0.66 0.769896
Target:  5'- cGGGCUGCCgCCCucccccGGGCCC--CCAUUGg -3'
miRNA:   3'- -CCUGAUGG-GGGu-----CUCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 38102 0.66 0.821203
Target:  5'- gGGACcaggccaagUACUCCCugcGGGGCCaguucccccugcUGACCACCa -3'
miRNA:   3'- -CCUG---------AUGGGGG---UCUCGG------------GCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 8211 0.66 0.769896
Target:  5'- aGGACUGgCCUa--GGCCCu-CCACCGg -3'
miRNA:   3'- -CCUGAUgGGGgucUCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 1074 0.66 0.769896
Target:  5'- uGGGCccACCCCCGG-GCCC--CCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCuCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 163475 0.66 0.795293
Target:  5'- aGGGCUcCCCCCAGA-CCCacaagaaguggauGACCcuaGCCu -3'
miRNA:   3'- -CCUGAuGGGGGUCUcGGG-------------CUGG---UGGc -5'
4007 5' -60.3 NC_001650.1 + 167781 0.66 0.769896
Target:  5'- uGGGCccACCCCCGG-GCCC--CCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCuCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 174918 0.66 0.769896
Target:  5'- aGGACUGgCCUa--GGCCCu-CCACCGg -3'
miRNA:   3'- -CCUGAUgGGGgucUCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 50653 0.66 0.804644
Target:  5'- gGGGCcggUGCCCgCggGGGGCCUGACCuucuACCu -3'
miRNA:   3'- -CCUG---AUGGGgG--UCUCGGGCUGG----UGGc -5'
4007 5' -60.3 NC_001650.1 + 74523 0.66 0.79615
Target:  5'- ---gUGCCCCCgguguuuggcagGGAGgCCG-CCACCGu -3'
miRNA:   3'- ccugAUGGGGG------------UCUCgGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 102344 0.66 0.787522
Target:  5'- gGGACcACUCCCAGAuaCCGGUCAUCu -3'
miRNA:   3'- -CCUGaUGGGGGUCUcgGGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 127137 0.66 0.804644
Target:  5'- aGACcaccgGgCCCCGGAGCCUGcgaACC-CCGu -3'
miRNA:   3'- cCUGa----UgGGGGUCUCGGGC---UGGuGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.