miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 54897 0.66 0.778768
Target:  5'- gGGAUUcugaGCCCCCGGcucgcGGCCUcgcucgGGCgGCCGg -3'
miRNA:   3'- -CCUGA----UGGGGGUC-----UCGGG------CUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 24166 0.66 0.778768
Target:  5'- uGACguccgagACCCCCGGGGUCgCGcuggagguGCCGCUGu -3'
miRNA:   3'- cCUGa------UGGGGGUCUCGG-GC--------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 167318 0.66 0.769896
Target:  5'- cGGGCUGCCgCCCucccccGGGCCC--CCAUUGg -3'
miRNA:   3'- -CCUGAUGG-GGGu-----CUCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 8211 0.66 0.769896
Target:  5'- aGGACUGgCCUa--GGCCCu-CCACCGg -3'
miRNA:   3'- -CCUGAUgGGGgucUCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 1074 0.66 0.769896
Target:  5'- uGGGCccACCCCCGG-GCCC--CCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCuCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 58093 0.66 0.79615
Target:  5'- -aGCcGCCCgCCGGGGCCUgGGCCGCg- -3'
miRNA:   3'- ccUGaUGGG-GGUCUCGGG-CUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 74523 0.66 0.79615
Target:  5'- ---gUGCCCCCgguguuuggcagGGAGgCCG-CCACCGu -3'
miRNA:   3'- ccugAUGGGGG------------UCUCgGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 145936 0.66 0.812997
Target:  5'- cGGGCU-CCCUguGccccAGCCCGGCC-CgGg -3'
miRNA:   3'- -CCUGAuGGGGguC----UCGGGCUGGuGgC- -5'
4007 5' -60.3 NC_001650.1 + 131565 0.66 0.812997
Target:  5'- gGGGCggagaaACCCCgAGGccgagguccuGCCCGugacCCACCGc -3'
miRNA:   3'- -CCUGa-----UGGGGgUCU----------CGGGCu---GGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 133306 0.66 0.812997
Target:  5'- gGGGCUGCCCaggaggcgCCGGGcgaggggacGCCCGAgCCAgCa -3'
miRNA:   3'- -CCUGAUGGG--------GGUCU---------CGGGCU-GGUgGc -5'
4007 5' -60.3 NC_001650.1 + 174102 0.66 0.812997
Target:  5'- gGGACaGCCCCCAuuGGGCCacgGGCUuuauuGCCc -3'
miRNA:   3'- -CCUGaUGGGGGU--CUCGGg--CUGG-----UGGc -5'
4007 5' -60.3 NC_001650.1 + 173756 0.66 0.812997
Target:  5'- uGGACaGCCCCCAuuGGGCCaugGGCUuuauuGCCc -3'
miRNA:   3'- -CCUGaUGGGGGU--CUCGGg--CUGG-----UGGc -5'
4007 5' -60.3 NC_001650.1 + 164426 0.66 0.812997
Target:  5'- gGGGCgUGCUCuaCCAGAGaccCCCGGCuCACCc -3'
miRNA:   3'- -CCUG-AUGGG--GGUCUC---GGGCUG-GUGGc -5'
4007 5' -60.3 NC_001650.1 + 94093 0.66 0.812997
Target:  5'- -aACUACUCCCAGuucauagaccaGGaCCUGuCCGCCGu -3'
miRNA:   3'- ccUGAUGGGGGUC-----------UC-GGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 7395 0.66 0.812997
Target:  5'- gGGACaGCCCCCAuuGGGCCacgGGCUuuauuGCCc -3'
miRNA:   3'- -CCUGaUGGGGGU--CUCGGg--CUGG-----UGGc -5'
4007 5' -60.3 NC_001650.1 + 7049 0.66 0.812997
Target:  5'- uGGACaGCCCCCAuuGGGCCaugGGCUuuauuGCCc -3'
miRNA:   3'- -CCUGaUGGGGGU--CUCGGg--CUGG-----UGGc -5'
4007 5' -60.3 NC_001650.1 + 85237 0.66 0.812997
Target:  5'- -uACUACCCCCucAGCCCccuGGCCuuCGg -3'
miRNA:   3'- ccUGAUGGGGGucUCGGG---CUGGugGC- -5'
4007 5' -60.3 NC_001650.1 + 7939 0.66 0.806326
Target:  5'- uGGACaucccccauuggGCCCCCguguguaaucaccacGGGGCCCGugCAUa- -3'
miRNA:   3'- -CCUGa-----------UGGGGG---------------UCUCGGGCugGUGgc -5'
4007 5' -60.3 NC_001650.1 + 127137 0.66 0.804644
Target:  5'- aGACcaccgGgCCCCGGAGCCUGcgaACC-CCGu -3'
miRNA:   3'- cCUGa----UgGGGGUCUCGGGC---UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 50653 0.66 0.804644
Target:  5'- gGGGCcggUGCCCgCggGGGGCCUGACCuucuACCu -3'
miRNA:   3'- -CCUG---AUGGGgG--UCUCGGGCUGG----UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.