miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 52353 0.66 0.784035
Target:  5'- gGGGCgcgaacccgucugACCCCCAcagggcuuGGGUgacgucggcggCCGGCCACCGc -3'
miRNA:   3'- -CCUGa------------UGGGGGU--------CUCG-----------GGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 25845 0.66 0.777886
Target:  5'- gGGAgaggUACCCgCCAccgcgcuGAcCCCGGCCGCCGa -3'
miRNA:   3'- -CCUg---AUGGG-GGU-------CUcGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 62616 0.66 0.778768
Target:  5'- uGGACggGCCaCCCgAGGGCgCUGcccuCCGCCGc -3'
miRNA:   3'- -CCUGa-UGG-GGG-UCUCG-GGCu---GGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 159645 0.66 0.787522
Target:  5'- gGGAC-ACCgCCAGGGCgUCGaACC-CCGa -3'
miRNA:   3'- -CCUGaUGGgGGUCUCG-GGC-UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 87631 0.66 0.787522
Target:  5'- -aGCUGCCUCUcaaauGAGCuuGACCAUUGu -3'
miRNA:   3'- ccUGAUGGGGGu----CUCGggCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 181161 0.66 0.769896
Target:  5'- gGGAg-GCCUCCGG-GCCCGGCgACg- -3'
miRNA:   3'- -CCUgaUGGGGGUCuCGGGCUGgUGgc -5'
4007 5' -60.3 NC_001650.1 + 115190 0.67 0.732447
Target:  5'- aGGACgucggACCUCacaaAGucaggccugcacaGGCCCGGCCGCUGc -3'
miRNA:   3'- -CCUGa----UGGGGg---UC-------------UCGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 41730 0.67 0.751827
Target:  5'- uGGACcaccacACCCaCCAGAGgucUCCGGCgGCCa -3'
miRNA:   3'- -CCUGa-----UGGG-GGUCUC---GGGCUGgUGGc -5'
4007 5' -60.3 NC_001650.1 + 171432 0.67 0.749083
Target:  5'- gGGGCUccggagGCCCUCcGuGCCCGGCUcggggaagaccuagGCCGg -3'
miRNA:   3'- -CCUGA------UGGGGGuCuCGGGCUGG--------------UGGC- -5'
4007 5' -60.3 NC_001650.1 + 131748 0.67 0.760913
Target:  5'- aGGACauguacuuCCCCCGGAgcagGCCCGAgguggaCCACUu -3'
miRNA:   3'- -CCUGau------GGGGGUCU----CGGGCU------GGUGGc -5'
4007 5' -60.3 NC_001650.1 + 4725 0.67 0.749083
Target:  5'- gGGGCUccggagGCCCUCcGuGCCCGGCUcggggaagaccuagGCCGg -3'
miRNA:   3'- -CCUGA------UGGGGGuCuCGGGCUGG--------------UGGC- -5'
4007 5' -60.3 NC_001650.1 + 164870 0.67 0.751827
Target:  5'- aGGAUgggagGCCCugaCUAGAGCgCG-CCGCCGc -3'
miRNA:   3'- -CCUGa----UGGG---GGUCUCGgGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 73472 0.67 0.742647
Target:  5'- cGGGCUucgccugccacgGCCCCCcGGGCCUcaGCCACgGc -3'
miRNA:   3'- -CCUGA------------UGGGGGuCUCGGGc-UGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 62880 0.67 0.742647
Target:  5'- gGGGCUccggaGCaCCCgGGGGCgCGACCcCCa -3'
miRNA:   3'- -CCUGA-----UG-GGGgUCUCGgGCUGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 166147 0.67 0.760913
Target:  5'- ----aGCCCCCAGAGugacaCCCGcCCACUc -3'
miRNA:   3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 24530 0.67 0.742647
Target:  5'- cGGCUGCCCCUAcccCCUGGCCGCg- -3'
miRNA:   3'- cCUGAUGGGGGUcucGGGCUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 132234 0.67 0.760913
Target:  5'- gGGAaugUACCCCCAacGCCUuuACCGCCGc -3'
miRNA:   3'- -CCUg--AUGGGGGUcuCGGGc-UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 88727 0.67 0.739875
Target:  5'- gGGGCUccucggggaaGCCCCCGGccggcaagcggggcAGgCCGACgCGCCu -3'
miRNA:   3'- -CCUGA----------UGGGGGUC--------------UCgGGCUG-GUGGc -5'
4007 5' -60.3 NC_001650.1 + 142771 0.67 0.733379
Target:  5'- aGGGCguuUCCCCAGGGC--GGCgGCCGg -3'
miRNA:   3'- -CCUGau-GGGGGUCUCGggCUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 155678 0.67 0.724032
Target:  5'- gGGACgagGCCggucCUCGGGGCCC-ACCACgGa -3'
miRNA:   3'- -CCUGa--UGG----GGGUCUCGGGcUGGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.