miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 179431 0.7 0.568949
Target:  5'- aGGcCUACCCCUcGAGCCCcGGCCuggauuugcagagGCCu -3'
miRNA:   3'- -CCuGAUGGGGGuCUCGGG-CUGG-------------UGGc -5'
4007 5' -60.3 NC_001650.1 + 49288 0.7 0.569907
Target:  5'- -aGCUGCCCCCGG-GCCUggagcuGGCCAgCGu -3'
miRNA:   3'- ccUGAUGGGGGUCuCGGG------CUGGUgGC- -5'
4007 5' -60.3 NC_001650.1 + 154986 0.7 0.560344
Target:  5'- cGGGgaGgUCCU-GAGCCCGGCCACCc -3'
miRNA:   3'- -CCUgaUgGGGGuCUCGGGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 164909 0.7 0.57951
Target:  5'- ----cACCCCCcGGGCCCcaccgcGGCCGCCGc -3'
miRNA:   3'- ccugaUGGGGGuCUCGGG------CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 67674 0.7 0.560344
Target:  5'- aGcCUGCCUgCAGAGCCUGaACCcCCGg -3'
miRNA:   3'- cCuGAUGGGgGUCUCGGGC-UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 89489 0.7 0.560344
Target:  5'- uGGACgcgUACCCCaGGAGCCCaaagaGCCGCuCGg -3'
miRNA:   3'- -CCUG---AUGGGGgUCUCGGGc----UGGUG-GC- -5'
4007 5' -60.3 NC_001650.1 + 12724 0.7 0.568949
Target:  5'- aGGcCUACCCCUcGAGCCCcGGCCuggauuugcagagGCCu -3'
miRNA:   3'- -CCuGAUGGGGGuCUCGGG-CUGG-------------UGGc -5'
4007 5' -60.3 NC_001650.1 + 136165 0.7 0.57951
Target:  5'- aGGCgcCCCCCGcGGCCuCGACC-CCGa -3'
miRNA:   3'- cCUGauGGGGGUcUCGG-GCUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 114958 0.7 0.589148
Target:  5'- uGGGCcACCUgaAGAGCCCagcGCCGCCGc -3'
miRNA:   3'- -CCUGaUGGGggUCUCGGGc--UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 114166 0.7 0.57951
Target:  5'- uGGACgcacagagACCCCCAaaagaaaAGCUCGuCCACCGc -3'
miRNA:   3'- -CCUGa-------UGGGGGUc------UCGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 71686 0.7 0.569907
Target:  5'- uGGGCaacauCCCCCAGucCCUGGCCcccGCCGg -3'
miRNA:   3'- -CCUGau---GGGGGUCucGGGCUGG---UGGC- -5'
4007 5' -60.3 NC_001650.1 + 66313 0.69 0.618203
Target:  5'- gGGAC-GCCCCCAaagaucAGCUCGgucACCGCCGc -3'
miRNA:   3'- -CCUGaUGGGGGUc-----UCGGGC---UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 114263 0.69 0.627916
Target:  5'- aGGCcGCCCCCAGcaucccGGuCCCGaagGCCGCCa -3'
miRNA:   3'- cCUGaUGGGGGUC------UC-GGGC---UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 114507 0.69 0.598813
Target:  5'- aGACUGCuCCUCGGGGCCUGcugguACC-CCGu -3'
miRNA:   3'- cCUGAUG-GGGGUCUCGGGC-----UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 109378 0.69 0.637632
Target:  5'- cGGACggGCCCCUGGAcaCCGgcaucuACCACCGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCUcgGGC------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 179177 0.69 0.647344
Target:  5'- ----cACCCCCGGAGggaccCCCGuCCGCCu -3'
miRNA:   3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 154454 0.69 0.6085
Target:  5'- cGGACgaggACCCagaguaCUGGGGCgCGGCCGCCu -3'
miRNA:   3'- -CCUGa---UGGG------GGUCUCGgGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 12470 0.69 0.647344
Target:  5'- ----cACCCCCGGAGggaccCCCGuCCGCCu -3'
miRNA:   3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 95498 0.69 0.598813
Target:  5'- gGGGCUuCCCCgaGGAGCCCccucCCGCCc -3'
miRNA:   3'- -CCUGAuGGGGg-UCUCGGGcu--GGUGGc -5'
4007 5' -60.3 NC_001650.1 + 112584 0.69 0.637632
Target:  5'- aGGCcacACCCCUGGcGCCCGGCgCGCCc -3'
miRNA:   3'- cCUGa--UGGGGGUCuCGGGCUG-GUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.