miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 126470 0.68 0.676386
Target:  5'- cGGGCUAcuCCCCCGucGCCC-ACC-CCGc -3'
miRNA:   3'- -CCUGAU--GGGGGUcuCGGGcUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 107181 0.68 0.705132
Target:  5'- cGGGCU-CCCCCGaGGCCCagcGCgGCCu -3'
miRNA:   3'- -CCUGAuGGGGGUcUCGGGc--UGgUGGc -5'
4007 5' -60.3 NC_001650.1 + 51796 0.68 0.708932
Target:  5'- cGGcCUGCCUCCcgaAGAccuccaccuccucgcGCCCGGCCagGCCGu -3'
miRNA:   3'- -CCuGAUGGGGG---UCU---------------CGGGCUGG--UGGC- -5'
4007 5' -60.3 NC_001650.1 + 50342 0.68 0.68601
Target:  5'- gGGGCgGCCUCUAGAGgC-GACCGCUGc -3'
miRNA:   3'- -CCUGaUGGGGGUCUCgGgCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 106258 0.68 0.705132
Target:  5'- uGGGCgcgacgGCCCCuCGGuGCCuCGcaGCCGCCc -3'
miRNA:   3'- -CCUGa-----UGGGG-GUCuCGG-GC--UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 134100 0.68 0.702277
Target:  5'- aGGCcaUGCCCgCAGAuagagagaucaaucGCCCGcACCACCa -3'
miRNA:   3'- cCUG--AUGGGgGUCU--------------CGGGC-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 55079 0.68 0.676386
Target:  5'- aGGGCcGCCCCCGuGucCUCGGCC-CCGg -3'
miRNA:   3'- -CCUGaUGGGGGU-CucGGGCUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 161538 0.68 0.695595
Target:  5'- uGGACgGCCgCCAGgauggaGGCCa-GCCGCCGg -3'
miRNA:   3'- -CCUGaUGGgGGUC------UCGGgcUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 131427 0.68 0.695595
Target:  5'- --cCUGCgCCCGG-GCCCcgagGGCCGCCGc -3'
miRNA:   3'- ccuGAUGgGGGUCuCGGG----CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 56162 0.68 0.695595
Target:  5'- ----aGCCCCUcGGGUCCG-CCACCGu -3'
miRNA:   3'- ccugaUGGGGGuCUCGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 41730 0.67 0.751827
Target:  5'- uGGACcaccacACCCaCCAGAGgucUCCGGCgGCCa -3'
miRNA:   3'- -CCUGa-----UGGG-GGUCUC---GGGCUGgUGGc -5'
4007 5' -60.3 NC_001650.1 + 164870 0.67 0.751827
Target:  5'- aGGAUgggagGCCCugaCUAGAGCgCG-CCGCCGc -3'
miRNA:   3'- -CCUGa----UGGG---GGUCUCGgGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 171432 0.67 0.749083
Target:  5'- gGGGCUccggagGCCCUCcGuGCCCGGCUcggggaagaccuagGCCGg -3'
miRNA:   3'- -CCUGA------UGGGGGuCuCGGGCUGG--------------UGGC- -5'
4007 5' -60.3 NC_001650.1 + 4725 0.67 0.749083
Target:  5'- gGGGCUccggagGCCCUCcGuGCCCGGCUcggggaagaccuagGCCGg -3'
miRNA:   3'- -CCUGA------UGGGGGuCuCGGGCUGG--------------UGGC- -5'
4007 5' -60.3 NC_001650.1 + 73472 0.67 0.742647
Target:  5'- cGGGCUucgccugccacgGCCCCCcGGGCCUcaGCCACgGc -3'
miRNA:   3'- -CCUGA------------UGGGGGuCUCGGGc-UGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 62880 0.67 0.742647
Target:  5'- gGGGCUccggaGCaCCCgGGGGCgCGACCcCCa -3'
miRNA:   3'- -CCUGA-----UG-GGGgUCUCGgGCUGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 131748 0.67 0.760913
Target:  5'- aGGACauguacuuCCCCCGGAgcagGCCCGAgguggaCCACUu -3'
miRNA:   3'- -CCUGau------GGGGGUCU----CGGGCU------GGUGGc -5'
4007 5' -60.3 NC_001650.1 + 115190 0.67 0.732447
Target:  5'- aGGACgucggACCUCacaaAGucaggccugcacaGGCCCGGCCGCUGc -3'
miRNA:   3'- -CCUGa----UGGGGg---UC-------------UCGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 111489 0.67 0.751827
Target:  5'- aGGCcACCCCCGGGcuggugaucCCCG-CCGCCGc -3'
miRNA:   3'- cCUGaUGGGGGUCUc--------GGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 13905 0.67 0.713669
Target:  5'- aGGCUuCCCCCGGAgagaggcGCCCcccugGACCcCCGg -3'
miRNA:   3'- cCUGAuGGGGGUCU-------CGGG-----CUGGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.